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Communication Dans Un Congrès Année : 2019

Surfing on protein waves: modeling the bacterial genome partitioning

Jean-Charles Walter

Résumé

Controlled motion and positioning of colloids and macromolecular complexes in a fluid, as well as catalytic particles in active environments, are fundamental processes in physics, chemistry and biology. Here we focus on an active biological system for which precise experimental results are available. Our work is fully inspired by studies of one of the most widespread and ancient mechanisms of liquid phase macromolecular segregation and positioning known in nature: bacterial DNA segregation systems. Efficient bacterial chromosome segregation typically requires the coordinated action of a three-component, fueled by adenosine triphosphate machinery called the partition complex. We can distinguish two steps: (i) a process of phase transition [2,3] to built a membraneless region of high protein concentration (partition complex) (ii) the action of molecular motor action upon the complex to create a chemical force. We mainly present a phenomenological model of reaction-diffusion for two families of proteins [1] describing the step (ii), the dynamics of the segregation of paired chromosomes. We also discuss the step (i) the phase transition mechanism giving rise to macromolecular assembly of proteins. Our predictions are compared to Super Resolution microscopy and microbiology experiments [1,2,3]. [1] Walter J.-C., Dorignac J., Lorman V., Rech J., Bouet J.-Y., Nollmann M., Palmeri J., Parmeggiani A. and Geniet F., Phys. Rev. Lett. 119, 028101 (2017). [2] Debaugny R., Sanchez A., Rech J., Labourdette D., Dorignac J., Geniet F., Palmeri J., Parmeggiani A., Boudsocq, Leberre V., Walter* J.-C. and Bouet* J.-Y Mol. Syst. Biol. 14, e8516 (2018) [3] David G., Walter J.-C., Broedersz C., Dorignac J., Geniet F., Parmeggiani A., Walliser N.-O. and Palmeri J., submitted to Phys. Rev. Lett. [arXiv/1811.09234] (2019).
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hal-02305387 , version 1 (04-10-2019)

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  • HAL Id : hal-02305387 , version 1

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Jean-Charles Walter. Surfing on protein waves: modeling the bacterial genome partitioning. Modeling phase separation in health and disease: from nano- to meso-scale, Sep 2019, Toulouse, France. ⟨hal-02305387⟩
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