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A powerful framework for an integrative study with heterogeneous omics data: from univariate statistics to multi-block analysis

Harold S Duruflé , Merwann Selmani , Philippe Ranocha , Elisabeth Jamet , Christophe Dunand et al.
Preprints, Working Papers, ... hal-03561588v1

The population dynamics of a bacterial pathogen after host re-infection affects the founding population size

Gaofei Jiang , Rémi Peyraud , Philippe Remigi , Alice Guidot , Richard Berthomé et al.
Preprints, Working Papers, ... hal-03741515v1

Synthesis and signalling of strigolactone and KAI2-ligand signals in bryophytes

Sandrine Bonhomme , Ambre Guillory
Journal of Experimental Botany, 2022, 73 (13), pp.4487-4495. ⟨10.1093/jxb/erac186⟩
Journal articles hal-03759109v1

Optimized cultivar deployment improves the efficiency and stability of sunflower crop production at national scale

Pierre Casadebaig , Arnaud Gauffreteau , Amélia Landré , Nicolas Langlade , Emmanuelle Mestries et al.
TAG Theoretical and Applied Genetics, 2022, ⟨10.1007/s00122-022-04072-5⟩
Journal articles hal-03617020v1

Transcriptional response to host chemical cues underpins the expansion of host range in a fungal plant pathogen lineage

Stefan Kusch , Justine Larrouy , Heba Ibrahim , Shantala Mounichetty , Noémie Gasset et al.
ISME Journal, 2022, 16 (1), pp.138-148. ⟨10.1038/s41396-021-01058-x⟩
Journal articles hal-03331958v1

Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals

Lise Pomiès , Celine Brouard , Harold S Duruflé , Élise Maigné , Clément Carré et al.
Bioinformatics, 2022, 38 (17), pp.4127-4134. ⟨10.1093/bioinformatics/btac445⟩
Journal articles hal-03776333v1

Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes that can stimulate root development

Claudia Bartoli , Stéphane Boivin , Marta Marchetti , Carine Gris , Virginie Gasciolli et al.
Environmental Microbiology, 2022, ⟨10.1111/1462-2920.16148⟩
Journal articles hal-03788989v1

Genetic co-option into plant–filamentous pathogen interactions

Joris Macquet , Shantala Mounichetty , Sylvain Raffaele
Trends in Plant Science, 2022, 27 (11), ⟨10.1016/j.tplants.2022.06.011⟩
Journal articles hal-03877987v1

A Genome-Wide Association study in Arabidopsis thaliana to decipher the adaptive genetics of quantitative disease resistance in a native heterogeneous environment

Fabrice Roux , Léa Frachon
PLoS ONE, 2022, 17 (10), pp.e0274561. ⟨10.1371/journal.pone.0274561⟩
Journal articles hal-03806727v1

Robust transcriptional indicators of immune cell death revealed by spatiotemporal transcriptome analyses

Jose Salguero-Linares , Irene Serrano , Nerea Ruiz-Solani , Marta Salas-Gómez , Ujjal Jyoti Phukan et al.
Molecular Plant, 2022, 15 (6), pp.1059-1075. ⟨10.1016/j.molp.2022.04.010⟩
Journal articles hal-03773545v1

The genetic architecture of adaptation to leaf and root bacterial microbiota in Arabidopsis thaliana

Fabrice Roux , Léa Frachon , Claudia Bartoli
Preprints, Working Papers, ... hal-03806731v1


Caroline Bellenot , Jean-Marc Routaboul , Patrick Laufs , Laurent D. Noël
Current Biology - CB, 2022, 32 (14), pp.R763-R764. ⟨10.1016/j.cub.2022.06.014⟩
Journal articles hal-03789619v1

The SNP-Based Profiling of Montecristo Feral Goat Populations Reveals a History of Isolation, Bottlenecks, and the Effects of Management

Elisa Somenzi , Gabriele Senczuk , Roberta Ciampolini , Matteo Cortellari , Elia Vajana et al.
Genes, 2022, 13 (2), 14 p. ⟨10.3390/genes13020213⟩
Journal articles hal-03544243v1

Maternal drought stress induces abiotic stress tolerance to the progeny at the germination stage in sunflower

Baptiste Vancostenoble , Nicolas Blanchet , Nicolas Langlade , Christophe Bailly
Environmental and Experimental Botany, 2022, 201, 12 p. ⟨10.1016/j.envexpbot.2022.104939⟩
Journal articles hal-03747756v1

APOK3 , a pollen killer antidote in Arabidopsis thaliana

Matthieu Simon , Stéphanie Durand , Anthony Ricou , Nathalie Vrielynck , Baptiste Mayjonade et al.
Genetics, 2022, 221 (4), 19 p. ⟨10.1093/genetics/iyac089⟩
Journal articles hal-03749911v1

A selective bottleneck during host entry drives the evolution of new legume symbionts

Ginaini Grazielli Doin de Moura , Saida Mouffok , Nil Gaudu , Anne-Claire Cazalé , Marine Milhes et al.
Preprints, Working Papers, ... hal-03811656v1

Symbiotic Nodule Development and Efficiency in the Medicago truncatula Mtefd-1 Mutant Is Highly Dependent on Sinorhizobium Strains

Marie‐françoise Jardinaud , Sebastien Carrere , Benjamin Gourion , Pascal Gamas
Plant and Cell Physiology, 2022, ⟨10.1093/pcp/pcac134⟩
Journal articles hal-03847531v1

A newly evolved chimeric lysin motif receptor‐like kinase in Medicago truncatula spp. tricycla R108 extends its Rhizobia symbiotic partnership

Thi‐bich Luu , Anna Ourth , Cécile Pouzet , Nicolas Pauly , Julie Cullimore et al.
New Phytologist, 2022, 235 (5), pp.1995-2007. ⟨10.1111/nph.18270⟩
Journal articles hal-03748498v1

A β-glucuronidase (GUS) Based Bacterial Competition Assay to Assess Fine Differences in Fitness during Plant Infection

Julien S Luneau , Laurent D. Noël , Emmanuelle Lauber , Alice Boulanger
Bio-protocol , 2022, 12 (13), ⟨10.21769/BioProtoc.3776⟩
Journal articles hal-03765278v1

Xanthomonas transcriptome inside cauliflower hydathodes reveals bacterial virulence strategies and physiological adaptations at early infection stages

Julien Luneau , Aude Cerutti , Brice Roux , Sébastien Carrère , Marie‐françoise Jardinaud et al.
Molecular Plant Pathology, 2022, 23 (2), pp.159-174. ⟨10.1111/mpp.13117⟩
Journal articles hal-03580527v1

Biocontrol liquid product, process of obtention and uses thereof

Celia Seassau , Stéphane Muños , Mireille Chabaud , Neila Ait Kaci Ahmed
France, Patent n° : 22306493.2. 2022
Patents hal-03956372v1

A bacterial GW-effector directly targets Arabidopsis Argonaute 1 to suppress PAMP-triggered immunity and cause disease

Odon Thiébeauld , Magali Charvin , Meenu Singla Rastogi , Fan Yang , Dominique Pontier et al.
Preprints, Working Papers, ... hal-03865997v1

A multi-organ metabolic model of tomato predicts plant responses to nutritional and genetic perturbations

Léo Gerlin , Ludovic Cottret , Antoine Escourrou , Stéphane Genin , Caroline Baroukh et al.
Plant Physiology, 2022, 188 (3), pp.1709-1723. ⟨10.1093/plphys/kiab548⟩
Journal articles hal-03727243v1

Unraveling the genetic architecture of the adaptive potential of Arabidopsis thaliana to face the bacterial pathogen Pseudomonas syringae in the context of global change

Claudia Bartoli , Mylène Rigal , Baptiste Mayjonade , Fabrice Roux
Preprints, Working Papers, ... hal-03811387v1

The genetic architecture of Arabidopsis thaliana in response to native non-pathogenic leaf bacterial species revealed by GWA mapping in field conditions

Daniela Ramírez-Sánchez , Rémi Duflos , Fabienne Vailleau , Fabrice Roux
Preprints, Working Papers, ... hal-03806730v1

Comparative phylotranscriptomics reveals a 110 million years-old symbiotic program

Cyril Libourel , Jean Keller , Lukas Brichet , Anne-Claire Cazalé , Sébastien Carrere et al.
Preprints, Working Papers, ... hal-03811677v1