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Cell cycle progression is regulated by intertwined redox oscillators

Jorgelindo da Veiga Moreira , Sabine Pérès , Jean-Marc Steyaert , Erwan Bigan , Loïc Paulevé et al.
Theoretical Biology and Medical Modelling, 2015, 12 (1), pp.10. ⟨10.1186/s12976-015-0005-2⟩
Journal articles hal-01158514v1

The EUROGEM map of human chromosome 17.

S A Cox , Gilles Vergnaud , J Milan , F Moreno , J Beckmann et al.
European Journal of Human Genetics, 1993, 2 (3), pp.236-7
Journal articles hal-01160665v1
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Algebraic change-point detection

Michel Fliess , Cédric Join , Mamadou Mboup
Applicable Algebra in Engineering, Communication and Computing, 2010, 21 (2), pp.131-143. ⟨10.1007/s00200-010-0119-z⟩
Journal articles inria-00439226v1

Biological Resource Discovery

Zoé Lacroix , R. Cartik , Peter Mork , Rami Rifaieh , Mark Wilkinson et al.
Ling Liu, M. Tamer Özsu. Encyclopedia of Database Systems, Springer US, pp.220-223, 2009
Book sections inria-00542357v1

Thermodynamics of RNA structures by Wang-Landau sampling

Lou Feng , Peter Clote
Bioinformatics, 2010, 26, pp.278-286. ⟨10.1093/bioinformatics/btq218⟩
Journal articles inria-00542620v1

LocalMove: computing on-lattice fits for biopolymers

Yann Ponty , R. Istrate , E. Porcelli , Peter Clote
Nucleic Acids Research, 2008, 36 (2), pp.W216-W222. ⟨10.1093/nar/gkn367⟩
Journal articles inria-00548867v1
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Apprentissage de fonctions de tri pour la prédiction d'interactions protéine-ARN

Adrien Guilhot-Gaudeffroy , Jérôme Azé , Julie Bernauer , Christine Froidevaux
EGC: Extraction et Gestion des Connaissances, Jan 2014, Rennes, France. pp.479-484
Conference papers hal-01016683v1

The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters.

Nicolas Seghezzi , Patrick Amar , Brian Koebmann , Peter R Jensen , Marie-Joëlle Virolle et al.
Applied Microbiology and Biotechnology, 2011, 90 (2), pp.615-23. ⟨10.1007/s00253-010-3018-0⟩
Journal articles istex hal-00643741v1

Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.

Sarel J Fleishman , Timothy A Whitehead , Eva-Maria Strauch , Jacob E Corn , Sanbo Qin et al.
Journal of Molecular Biology, 2011, 414 (2), in press. ⟨10.1016/j.jmb.2011.09.031⟩
Journal articles inria-00637848v1

On permuted super-secondary structures of transmembrane β-barrel proteins

Thuong van Du Tran , Philippe Chassignet , Jean-Marc Steyaert
Theoretical Computer Science, 2014, ⟨10.1016/j.tcs.2013.10.001⟩
Journal articles hal-00869141v1
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On Armstrong-compliant Logical Query Languages

Marie Agier , Christine Froidevaux , Jean-Marc Petit , Yoan Renaud , Jef Wijsen et al.
4th International Workshop on Logic in Databases, (EDBT/ICDT '10 joint conference), George H. L. Fletcher and Slawek Staworko, 2011, Uppsala, Sweden. pp.33-40
Conference papers hal-00649604v1
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Evaluating mixture models for building RNA knowledge-based potentials.

Adelene y L Sim , Olivier Schwander , Michael Levitt , Julie Bernauer
Journal of Bioinformatics and Computational Biology, 2012, 10 (2), pp.1241010. ⟨10.1142/S0219720012410107⟩
Journal articles hal-00757761v1
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Combining machine learning and reference-free transcriptome analysis for the identification of prostate cancer signatures

Thi Ngoc Ha Nguyen
Bioinformatics [q-bio.QM]. Université Paris-Saclay, 2020. English. ⟨NNT : 2020UPASL069⟩
Theses tel-03139949v1
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A Mathematical Model of Phospholipid Biosynthesis

Mahsa Behzadi
Bioinformatics [q-bio.QM]. Ecole Polytechnique X, 2011. English. ⟨NNT : ⟩
Theses tel-00650399v1

High-Throughput Sequencing Reveals Circular Substrates for an Archaeal RNA ligase.

Hubert F Becker , Alice Héliou , Kamel Djaout , Roxane Lestini , Mireille Regnier et al.
RNA Biology, 2017, 14, pp.1075-1085. ⟨10.1080/15476286.2017.1302640⟩
Journal articles hal-01491132v1

Can Probabilistic Model Checking Explore Ribo-Nucleic Acid Folding Space?

Stefan Janssen , Loïc Paulevé , Yann Ponty , Balaji Raman , Matthias Zytnicki et al.
IWBDA - 4th International Workshop on Bio-Design Automation - 2012, Jun 2012, San Francisco, United States
Conference papers hal-00712557v1

Using Kendall-Tau Meta-Bagging to Improve Protein-Protein Docking Predictions

Jérôme Azé , Thomas Bourquard , Sylvie Hamel , Anne Poupon , David Ritchie et al.
PRIB 2011, Marcel Reinders and Dick de Ridder, Nov 2011, DELFT, Netherlands. pp.284-295
Conference papers inria-00628038v1

Unique Features and Anti-microbial Targeting of Folate- and Flavin-Dependent Methyltransferases Required for Accurate Maintenance of Genetic Information

Hannu Myllykallio , Pierre Sournia , Alice Héliou , Ursula Liebl
Frontiers in Microbiology, 2018, 9, pp.918. ⟨10.3389/fmicb.2018.00918⟩
Journal articles hal-01873302v1
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Similarity Search for Scientific Workflows

Johannes Starlinger , Bryan Brancotte , Sarah Cohen-Boulakia , Ulf Leser
Proceedings of the VLDB Endowment (PVLDB), 2014, 7 (12), pp.1143-1154. ⟨10.14778/2732977.2732988⟩
Journal articles hal-01066046v1

Toxicity of carbon dioxide: a review

Adeline Guais , Gérard Brand , Laurence Jacquot , Mélanie Karrer , Sam Dukan et al.
Chemical Research in Toxicology, 2011, 24 (12), pp.2061-2070. ⟨10.1021/tx200220r⟩
Journal articles hal-01123421v1

(Re)Use in Public Scientific Workflow Repositories

Johannes Starlinger , Sarah Cohen-Boulakia , Ulf Leser
Scientific and Statistical Database Management - 24th International Conference, SSDBM 2012, Jun 2012, Chania, Greece. pp.361-378
Conference papers hal-00748029v1
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Layer Decomposition: An Effective Structure-based Approach for Scientific Workflow Similarity

Johannes Starlinger , Sarah Cohen-Boulakia , Sanjeev Khanna , Susan Davidson , Ulf Leser et al.
International Conference on e-Science, Oct 2014, Guarujá, Brazil. pp.169-176, ⟨10.1109/eScience.2014.19⟩
Conference papers hal-01066076v1

Binding of intronic miRNAs to the mRNAs of host genes encoding intronic miRNAs and proteins that participate in tumourigenesis

Olga Berillo , Mireille Regnier , Anatoly Ivashchenko
Computers in Biology and Medicine, 2013, ⟨10.1016/j.compbiomed.2013.07.011⟩
Journal articles hal-00850103v1
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Using the Fast Fourier Transform to accelerate the computational search for RNA conformational switches (extended abstract)

Evan Senter , Saad Sheikh , Ivan Dotu , Yann Ponty , Peter Clote et al.
RECOMB - 17th Annual International Conference on Research in Computational Molecular Biology - 2013, Apr 2013, Beijing, China
Conference papers hal-00766780v1

Metabolic Treatment of Cancer: Intermediate Results of a Prospective Case Series

Schwartz Laurent , Buhler Ludivine , Icard Philippe , Lincet Hubert , Jean-Marc Steyaert et al.
Anticancer Research, 2014
Journal articles hal-00933725v1

A Declarative View of Signaling Pathways

Davide Chiarugi , Moreno Falaschi , Carlos Olarte , Catuscia Palamidessi
Chiara Bodei; Gian Luigi Ferrari; Corrado Priami. Programming Languages with Applications to Biology and Security, 9465, Springer, pp.183-201, 2015, Lecture Notes in Computer Science, 978-3-319-25526-2
Book sections hal-01271650v1
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SPARCS: a web server to analyze (un)structured regions in coding RNA sequences.

Yang Zhang , Yann Ponty , Mathieu Blanchette , Eric Lecuyer , Jérôme Waldispühl et al.
Nucleic Acids Research, 2013, Web Server Issue, 41 (Web Server issue), pp.W480-5. ⟨10.1093/nar/gkt461⟩
Journal articles hal-00819017v1

OKVAR-Boost: a novel boosting algorithm to infer nonlinear dynamics and interactions in gene regulatory networks.

Néhémy Lim , Yasin Senbabaoglu , George Michailidis , Florence d'Alché-Buc
Bioinformatics, 2013, 29 (11), pp.1416--1423. ⟨10.1093/bioinformatics/btt167⟩
Journal articles hal-00819024v1
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Characteristics of Intronic and Intergenic Human miRNAs and Features of their Interaction with mRNA

Assel Issabekova , Olga Berillo , Vladimir Khailenko , Shara Atambayeva , Mireille Regnier et al.
International Journal of Biotechnology and Bioengineering, 2011, 5 (11), pp.777-780
Journal articles hal-00779236v1

Chromosome Replication in Escherichia coli: Life on the Scales

Vic Norris , Patrick Amar
Life (Chicago, Ill. : 1978), 2012, 2 (4), pp.286-312. ⟨10.3390/life2040286⟩
Journal articles hal-00758130v1