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Design of a functional DNA microarray targeting the methanogenic community of complex anaerobic ecosystems

Ourdia Bouzid , Corinne Biderre-Petit , Eric Dugat-Bony , Mohieddine Missaoui , Diego Morgavi et al.
7. Joint Symposium of Rowett-INRA 2010, Jun 2010, Aberdeen, United Kingdom. 2010
Conference poster hal-02823797v1
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Reconstruction of plasmids by shotgun sequencing from environmental DNA: which bioinformatic workflow?

Cécile Hilpert , Geneviève Bricheux , Didier Debroas
Briefings in Bioinformatics, 2021, 2020, pp.1 - 14. ⟨10.1093/bib/bbaa059⟩
Journal articles hal-02882372v1

Simulating the Impact of the Natural Radiation Background on Bacterial Systems: Implications for Very Low Radiation Biological Experiments

Nathanael Lampe , David Biron , Jeremy M. C. Brown , Sébastien Incerti , Pierre Marin et al.
PLoS ONE, 2016, 11 (11), pp.e0166364. ⟨10.1371/journal.pone.0166364⟩
Journal articles hal-01610267v1
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Expert Opinion Elicitation for Assisting Deep Learning based Lyme Disease Classifier with Patient Data

Sk Imran Hossain , Jocelyn de Goër de Herve , David Abrial , Richard Emillion , Isabelle Lebert et al.
2022
Preprints, Working Papers, ... hal-03765092v1

Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation

Eric Peyretaillade , Olivier Gonçalves , Sébastien Terrat , Eric Dugat-Bony , Patrick Wincker et al.
BMC Genomics, 2009, 10 (1), ⟨10.1186/1471-2164-10-607⟩
Journal articles hal-01888038v1

Réponse des communautés microbiennes du sol aux herbicides: exemple de la mésotrione dans une étude dose-effet en microcosme

Olivier Crouzet , Isabelle Batisson , Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan , Christophe Mallet
XXXIXème congrès du Groupe Français des Pesticides, May 2009, Toulouse, France
Conference papers hal-02756521v1
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Portage de ePANAM sur la grille de calcul

Trung-Tung Doan , Hong Quang Nguyen , Najwa Taib , Jean-Christophe Charvy , Gisèle Bronner et al.
Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France
Conference papers hal-00660147v1
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Détermination de sondes oligonucléotidiques pour biopuces phylogénétiques en environnement grille de calcul

Faouzi Jaziri , Sébastien Cipière , Mohieddine Missaoui , Denonfoux Jérémie , Eric Dugat-Bony et al.
Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France
Conference papers hal-00658712v1
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Positional cloning of a candidate gene for resistance to the sunflower downy mildew, Plasmopara halstedii race 300.

Jérôme Franchel , Mohamed-Fouad M. Bouzidi , Gisèle Bronner , Felicity Vear , Paul Nicolas et al.
TAG Theoretical and Applied Genetics, 2013, 126 (2), pp.359-67. ⟨10.1007/s00122-012-1984-6⟩
Journal articles hal-00822169v1
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HiSpOD: probe design for functional DNA microarrays.

Eric Dugat-Bony , Mohieddine Missaoui , Eric Peyretaillade , Corinne Biderre-Petit , Ourdia Bouzid et al.
Bioinformatics, 2011, 27 (5), pp.641-8. ⟨10.1093/bioinformatics/btq712⟩
Journal articles hal-00842882v1
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Sequencing of the smallest apicomplexan genome from the human pathogen Babesia Microti

Emmanuel Cornillot , Kamel Hadj-Kaddour , Amina Dassouli , Benjamin Noel , Vincent Ranwez et al.
Nucleic Acids Research, 2012, 40 (18), pp.9102-9114. ⟨10.1093/nar/gks700⟩
Journal articles lirmm-00818833v1

On Evidential Clustering with Partial Supervision

Nicolas Labroche , Antoine Violaine , Kevin Gravouil
BELIEF 2018, Sep 2018, Compiègne, France. pp.14-21, ⟨10.1007/978-3-319-99383-6_3⟩
Conference papers hal-01895307v1

A De Novo Robust Clustering Approach for Amplicon-Based Sequence Data

Alexandre Bazin , Didier Debroas , Engelbert Mephu Nguifo
Journal of Computational Biology, 2019, 26 (6), pp.618-624. ⟨10.1089/cmb.2018.0170⟩
Journal articles hal-02359826v1

Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages

Simon Roux , François Enault , Viviane Ravet , Olivier Pereira , Matthew B. Sullivan et al.
Frontiers in Microbiology, 2015, 6, pp.199. ⟨10.3389/fmicb.2015.00199⟩
Journal articles hal-01254665v1
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Plasmidome analysis of a hospital effluent biofilm: Status of antibiotic resistance

Claire Hennequin , Christiane Forestier , Ousmane Traore , Didier Debroas , Geneviève Bricheux et al.
Plasmid, 2022, 122, pp.102638. ⟨10.1016/j.plasmid.2022.102638⟩
Journal articles hal-03738674v1
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Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

Vuong Quoc Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur et al.
Environmental Microbiology, 2022, ⟨10.1111/1462-2920.16120⟩
Journal articles hal-03727436v1
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Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae

Johan Panek , Hicham El Alaoui , Anne Mone , Serge Urbach , Edith Demettre et al.
PLoS ONE, 2014, 9 (6), pp.e100791. ⟨10.1371/journal.pone.0100791⟩
Journal articles hal-01053924v1

Viruses as key reservoirs of antibiotic resistance genes in the environment

Didier Debroas , Cléa Siguret
ISME Journal, 2019, 13 (11), pp.2856-2867. ⟨10.1038/s41396-019-0478-9⟩
Journal articles hal-02359694v1

Complete backtranslation of oligopeptides for metabolic pathways exploration of complex environments using functional microarrays

Mohieddine Missaoui , David R.C. Hill , Cécile Militon , Pierre Peyret
7th IEEE International Conference on Bioinformatics and Bioengineering, Oct 2007, Boston (MA), France. pp.1275-1279
Conference papers hal-00704699v1
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Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting

Bashar Ibrahim , Ksenia Arkhipova , Arno C Andeweg , Susana Posada-Céspedes , François Enault et al.
Viruses, 2018, 10 (5), pp.256. ⟨10.3390/v10050256⟩
Journal articles hal-01964743v1
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DegenRev: Degeneracy-Based Full Backtranslation Algorithm for Oligopeptide

Mohieddine Missaoui , David R.C. Hill , Pierre Peyret
2007
Reports hal-00678339v1

Unveiling Crucivirus Diversity by Mining Metagenomic Data

Ignacio de La Higuera , George Kasun , Ellis Torrance , Alyssa Pratt , Amberlee Maluenda et al.
mBio, 2020, 11 (5), ⟨10.1128/mBio.01410-20⟩
Journal articles hal-02996209v1

Rumen methanogens exhibit specific energetic and growth dynamics: a modelling approach

Rafael Munoz Tamayo , Milka Popova , Diego Morgavi , Dominique Graviou , Jean Pierre Morel et al.
10. International Symposium on the Nutrition of Herbivores (ISNH10), Sep 2018, Clermont-Ferrand, France. Cambridge University Press, Advances in Animal Biosciences, 9 (3), 2018, 10th. International Symposium on the Nutrition of Herbivores (ISNH10)
Conference poster hal-02734246v1

Response of N-cycling bacterial communities to an herbicide disturbance in an agricultural organic soil

Olivier Crouzet , Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan , Frédérique Bonnemoy , Isabelle Batisson , Jacques Bohatier et al.
SETAC Europe 18th Annual Meeting, May 2008, Varsovie, Poland
Conference papers hal-02752019v1
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Méthodes et outils logiciels pour la conception de sondes oligonucléotidiques pour puces à ADN. Applications aux biopuces transcriptomiques et aux biopuces de type phylogénétique

Sébastien Rimour
Biotechnologie. Université Blaise Pascal - Clermont-Ferrand II, 2006. Français. ⟨NNT : 2006CLF21691⟩
Theses tel-00703396v1
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Phylogenetic study of plant Q-type C2H2 zinc finger proteins and expression analysis of poplar genes in response to osmotic, cold and mechanical stresses.

Delphine Gourcilleau , Catherine Lenne , Claudia Armenise , Bruno B. Moulia , Jean-Louis J.-L. Julien et al.
DNA Research, 2011, 18 (2), pp.77-92. ⟨10.1093/dnares/dsr001⟩
Journal articles hal-00842840v1
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Seasonal microbial dynamics in the ocean inferred from assembled and unassembled data: a view on the unknown biosphere

Didier Debroas , Corentin Hochart , Pierre Galand
ISME Communications, 2022, 2 (1), pp.87. ⟨10.1038/s43705-022-00167-8⟩
Journal articles hal-03811115v1

WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs

Clovis Galiez , Matthias Siebert , Francois Enault , Jonathan Vincent , Johannes Söding et al.
Bioinformatics, 2017, 33 (19), pp.3113-3114. ⟨10.1093/bioinformatics/btx383⟩
Journal articles hal-02088265v1
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Automatic Parallelization of a Gap Model using Java and OpenCL

Jonathan Passerat-Palmbach , Arthur Forest , Julien Pal , Bruno Corbara , David R.C. Hill et al.
European Simulation and Modelling Conference, Oct 2012, Essen, Belgium. pp.24-31
Conference papers hal-01083187v1

Etude de la diversité bactérienne et caractérisation des voies métaboliques du méthane par une approche biopuces ADN

C. Biderre , Valérie Lasbats , X. Brottel , A.C. Lehours , S. Terrat et al.
Biopuces et Ecologie Microbienne, Oct 2006, Clermont-Ferrand, France. 1 p., 2006
Conference poster hal-02824084v1