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Automated Quantification With Sub-Micrometer Scale Precision In Volumetric Multicolor Multiphoton Microscopy Images

Minh Son Phan , Katherine S. Matho , Lamiae Abdeladim , Jean Livet , Emmanuel Beaurepaire et al.
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2019, Venice, France. pp.521-525, ⟨10.1109/ISBI.2019.8759200⟩
Conference papers hal-02372253v1
Image document

Targeting the transposable elements of the genome to enable large-scale genome editing and bio-containment technologies.

Oscar Castanon Velasco
Biotechnology. Université Paris Saclay (COmUE), 2019. English. ⟨NNT : 2019SACLX006⟩
Theses tel-02527174v1

Motile cilia and left-right symmetry breaking: from images to biological insights

Willy Supatto
2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), Apr 2020, Iowa City, United States. ⟨10.1109/ISBI45749.2020⟩
Conference papers hal-02958667v1

GANs for Biological Image Synthesis

Anton Osokin , Anatole Chessel , Rafael E. Carazo Salas , Federico Vaggi
ICCV 2017 - IEEE International Conference on Computer Vision, Oct 2017, Venice, Italy
Conference papers hal-01611692v1
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nAdder: A scale-space approach for the 3D analysis of neuronal traces

Minh Son Phan , Katherine Matho , Emmanuel Beaurepaire , Jean Livet , Anatole Chessel et al.
2020
Preprints, Working Papers, ... hal-03083517v1

Time-lapsed SHG imaging of collagen fibrillogenesis, correlation to electronic microscopy

Stéphane Bancelin , Carole Aimé , Vaïa Machairas , Etienne Decencière , Claire Albert et al.
Focus on microscopy, 2013, Netherlands
Conference papers hal-00881670v1
Image document

nAdder: A scale-space approach for the 3D analysis of neuronal traces

Minh Son Phan , Katherine Matho , Emmanuel Beaurepaire , Jean Livet , Anatole Chessel et al.
PLoS Computational Biology, 2022, 18 (7), pp.e1010211. ⟨10.1371/journal.pcbi.1010211⟩
Journal articles hal-03874685v2

Imaging and 3D morphological analysis of collagen fibrils

Hellen Altendorf , Etienne Decencière , Dominique Jeulin , Paolo de Sa Peixoto , Ariane Deniset-Besseau et al.
Journal of Microscopy, 2012, 247 (2), pp.161-175. ⟨10.1111/j.1365-2818.2012.03629.x⟩
Journal articles istex hal-00789405v1
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Stratégies avancées d'imagerie multiphoton pour l'étude de processus périodiques rapides in vivo : des cils motiles au cœur battant

Guillaume Pakula
Optique [physics.optics]. Université Paris Saclay (COmUE), 2019. Français. ⟨NNT : 2019SACLX018⟩
Theses tel-03227470v1
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Parametrization of Force Field Bonded Terms under Structural Inconsistency

Anastasia Croitoru , Alexey Aleksandrov
Journal of Chemical Information and Modeling, 2022, pp.4471-4482. ⟨10.1021/acs.jcim.2c00950⟩
Journal articles hal-03779485v1
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Insights into G-Quadruplex–Hemin Dynamics Using Atomistic Simulations: Implications for Reactivity and Folding

Petr Stadlbauer , Barira Islam , Michal Otyepka , Jielin Chen , David Monchaud et al.
Journal of Chemical Theory and Computation, 2021, 17 (3), pp.1883 - 1899. ⟨10.1021/acs.jctc.0c01176⟩
Journal articles hal-03200900v1
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Bacterial origin of thymidylate and folate metabolism in Asgard Archaea

Jonathan Filée , Hubert F Becker , Lucille Mellottee , Zhihui Li , Jean-Christophe Lambry et al.
2022
Preprints, Working Papers, ... hal-03855599v1
Image document

Fibrillogenesis from nanosurfaces: multiphoton imaging and stereological analysis of collagen 3D self-assembly dynamics

Stéphane Bancelin , Etienne Decencière , Vaïa Machairas , Claire Albert , Thibaud Coradin et al.
Soft Matter, 2014, pp.6651-6657. ⟨10.1039/c4sm00819g⟩
Journal articles hal-01082854v1
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Second Harmonic Generation imaging of collagen fibrillogenesis

S Bancelin , Carole Aimé , Vaïa Machairas , Etienne Decencière , Claire Albert et al.
Lasers and Electro-Optics Europe (CLEO EUROPE/IQEC), Jun 2013, Munich, Germany. pp.1 - 1, ⟨10.1109/CLEOE-IQEC.2013.6801528⟩
Conference papers hal-01082882v1
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GeNePy3D: a quantitative geometry python toolbox for bioimaging

Minh-Son Phan , Anatole Chessel
Journal articles pasteur-03678857v1

Combining the polarizable Drude force field with a continuum electrostatic Poisson-Boltzmann implicit solvation model

Alexey Aleksandrov , Fang-Yu Lin , Benoît Roux , Alexander Mackerell
Journal of Computational Chemistry, 2018, 39 (22), pp.1707-1719. ⟨10.1002/jcc.25345⟩
Journal articles hal-02406669v1
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Investigation des Interactions Toxine-Cellule et du Confinement des Récepteurs dans la Membrane Cellulaire

Maximilian U. Richly
Biophysique [physics.bio-ph]. Ecole Doctorale Polytechnique, 2015. Français. ⟨NNT : ⟩
Theses tel-01179545v1
Image document

Neural Cell Segmentation in Large-Scale 3D Color Fluorescence Microscopy Images for Developemental Neuroscience

F. Nourbakhsh , L. Abdeladim , S. Clavreul , K. Loulier , E. Beaurepaire et al.
25th IEEE International Conference on Image Processing (ICIP 2018), Oct 2018, Athènes, Greece. ⟨10.1109/ICIP.2018.8451702⟩
Conference papers hal-01910114v1
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Additive CHARMM36 Force Field for Nonstandard Amino Acids

Anastasia Croitoru , Sang-Jun Park , Anmol Kumar , Jumin Lee , Wonpil Im et al.
Journal of Chemical Theory and Computation, 2021, 17 (6), pp.3554-3570. ⟨10.1021/acs.jctc.1c00254⟩
Journal articles hal-03363116v1