Set-Min Sketch: A Probabilistic Map for Power-Law Distributions with Application to k -Mer Annotation
Abstract
k-mer counts are important features used by many bioinformatics pipelines. Existing k-mer counting methods focus on optimizing either time or memory usage, producing in output very large count tables explicitly representing k-mers together with their counts. Storing k-mers is not needed if the set of k-mers is known,
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