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authFullName_s : Gaëlle Lelandais

Meet-U: Educating through research immersion

Nika Abdollahi , Alexandre Albani , Eric Anthony , Agnes Baud , Mélissa Cardon et al.
PLoS Computational Biology, 2018, 14 (3), pp.e1005992. ⟨10.1371/journal.pcbi.1005992⟩
Journal articles hal-04011118v1

Fermentation and Alternative Respiration Compensate for NADH Dehydrogenase Deficiency in a Prokaryotic Model of DJ-1 Associated Parkinsonism.

Nadia Messaoudi , Valérie Gautier , Julien Dairou , Mouadh Mihoub , Gaëlle Lelandais et al.
Microbiology, 2015, 161 (11), ⟨10.1099/mic.0.000181⟩
Journal articles hal-01266852v1
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Novel Insights into Quantitative Proteomics from an Innovative Bottom-Up Simple Light Isotope Metabolic (bSLIM) Labeling Data Processing Strategy

Nicolas Sénécaut , Gelio Alves , Hendrik Weisser , Laurent Lignières , Samuel Terrier et al.
Journal of Proteome Research, 2021, 20 (3), pp.1476-1487. ⟨10.1021/acs.jproteome.0c00478⟩
Journal articles hal-03266586v1
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Functional networks of co-expressed genes to explore iron homeostasis processes in the pathogenic yeast Candida glabrata

Thomas Denecker , Youfang Zhou Li , Cécile Fairhead , Karine Budin , Jean-Michel Camadro et al.
NAR Genomics and Bioinformatics, 2020, 2 (2), pp.lqaa027. ⟨10.1093/nargab/lqaa027⟩
Journal articles hal-03452211v1
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Omics analyses, how to navigate through a constant data deluge

Thomas Denecker , Gaëlle Lelandais
2021
Preprints, Working Papers, ... hal-03429581v1
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The CCAAT-Binding Complex Controls Respiratory Gene Expression and Iron Homeostasis in Candida Glabrata

Antonin Thiébaut , Thierry Delaveau , Médine Benchouaia , Julia Boeri , Mathilde Garcia et al.
Scientific Reports, 2017, 7, pp.3531. ⟨10.1038/s41598-017-03750-5⟩
Journal articles hal-01556855v1
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Pixel: a content management platform for quantitative omics data

Thomas Denecker , William Durand , Julien Maupetit , Charles Hébert , Jean-Michel Camadro et al.
PeerJ, 2019, 7, pp.e6623. ⟨10.7717/peerj.6623⟩
Journal articles hal-03100146v1
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RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.

Sanjiveeni Dhamgaye , Maria Bernard , Gaëlle Lelandais , Odile Sismeiro , Sophie Lemoine et al.
BMC Genomics, 2012, 13 (1), pp.396. ⟨10.1186/1471-2164-13-396⟩
Journal articles inserm-00733893v1
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MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states.

Gaëlle Lelandais , Philippe Marc , Pierre Vincens , Claude Jacq , Stéphane Vialette et al.
BMC Bioinformatics, 2004, 5, pp.20. ⟨10.1186/1471-2105-5-20⟩
Journal articles inserm-00112944v1
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Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae

Thierry Delaveau , Dimitri Davoine , Ariane Jolly , Antoine Vallot , Jérôme O. Rouvière et al.
Nucleic Acids Research, 2016, 44 (18), pp.8826-8841. ⟨10.1093/nar/gkw732⟩
Journal articles hal-01361729v1
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Acclimation of a low iron adapted Ostreococcus strain to iron limitation through cell biomass lowering

Hugo Botebol , Gaëlle Lelandais , Christophe Six , Emmanuel Lesuisse , Arnaud Meng et al.
Scientific Reports, 2017, 7 (1), pp.327. ⟨10.1038/s41598-017-00216-6⟩
Journal articles hal-01502140v1

The metacaspase (Mca1p) has a dual role in farnesol-induced apoptosis in Candida albicans.

Thibaut Léger , Camille Garcia , Marwa Ounissi , Gaëlle Lelandais , Jean-Michel Camadro et al.
Molecular and Cellular Proteomics, 2014, 14 (1), pp.93-108. ⟨10.1074/mcp.M114.041210⟩
Journal articles hal-01131201v1

bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes

Jawad Merhej , Amandine Frigo , Stéphane Le Crom , Jean-Michel Camadro , Frédéric Devaux et al.
Yeast, 2014, 31 (10), pp.375-91. ⟨10.1002/yea.3031⟩
Journal articles hal-01132624v1

Quantitative Proteomics in Yeast: From bSLIM and Proteome Discoverer Outputs to Graphical Assessment of the Significance of Protein Quantification Scores

Nicolas Sénécaut , Pierre Poulain , Laurent Lignières , Samuel Terrier , Véronique Legros et al.
Yeast Functional Genomics, 2477, Springer US, pp.275-292, 2022, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2257-5_16⟩
Book sections hal-03858134v1

Clustering Gene Expression Using Graphs Separators

Bangaly Kaba , Nicolas Pinet , Gaëlle Lelandais , Alain Sigayret , Anne Berry et al.
In Silico Biology, 2007, 7-2007, pp.#0031
Journal articles hal-00521936v1

Empowering the detection of ChIP-seq "basic peaks" (bPeaks) in small eukaryotic genomes with a web user-interactive interface

Thomas Denecker , Gaëlle Lelandais
BMC Research Notes, 2018, 11 (1), pp.698. ⟨10.1186/s13104-018-3802-y⟩
Journal articles hal-02177599v1

Bounded List Injective Homomorphism for Comparative Analysis of Protein-Protein Interaction Graphs

Isabelle Fagnot , Gaëlle Lelandais , Stéphane Vialette
Journal of Discrete Algorithms, 2008, 6 (2), pp.178-191
Journal articles hal-00619701v1

Bounded List Injective Homomorphism for Comparative Analysis of Protein-Protein Interaction Graphs

Isabelle Fagnot , Gaëlle Lelandais , Stéphane Vialette
1st International Conference on Algorithms and Computational Methods for Biochemical and Evolutionar, Dec 2004, Recife,Brazil, Brazil. pp.45-70
Conference papers hal-00620023v1

Yap7 is a transcriptional repressor of nitric oxide oxidase in yeasts, which arose from neofunctionalization after whole genome duplication

Jawad Merhej , Thierry Delaveau , Juliette Guitard , Benoit Palancade , Christophe Hennequin et al.
Molecular Microbiology, 2015, 96 (5), pp.951-972. ⟨10.1111/mmi.12983⟩
Journal articles hal-04015694v1

Yap7 is a transcriptional repressor of nitric oxide oxidase in yeasts, which arose from neofunctionalization after whole genome duplication

Jawad Merhej , Thierry Delaveau , Juliette Guitard , Benoit Palancade , Christophe Hennequin et al.
Molecular Microbiology, 2015, 96 (5), pp.951-972. ⟨10.1111/mmi.12983⟩
Journal articles hal-04023395v1

Global stress response in a prokaryotic model of DJ-1-associated Parkinsonism.

Nadia Messaoudi , Valérie Gautier , Fatoum Kthiri , Gaëlle Lelandais , Mouadh Mihoub et al.
Journal of Bacteriology, 2013, 195 (6), pp.1167-78. ⟨10.1128/JB.02202-12⟩
Journal articles hal-00813704v1
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Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton

Gaëlle Lelandais , Ivo Scheiber , Javier Paz-Yepes , Jean-Claude Lozano , Hugo Botebol et al.
BMC Genomics, 2016, 17 (1), pp.319. ⟨10.1186/s12864-016-2666-6⟩
Journal articles hal-01313623v1
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A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata

Jawad Merhej , Antonin Thiebaut , Corinne Blugeon , Juliette Pouch , Mohammed El Amine Ali Chaouche et al.
Frontiers in Microbiology, 2016, 7, pp.645. ⟨10.3389/fmicb.2016.00645⟩
Journal articles hal-01323791v1
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Statistical inference of the time-varying structure of gene-regulation networks.

Sophie Lèbre , Jennifer Becq , Frédéric Devaux , Michael Stumpf , Gaëlle Lelandais et al.
BMC Systems Biology, 2010, 4 (1), pp.130. ⟨10.1186/1752-0509-4-130⟩
Journal articles inserm-00663719v1
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Comparative Transcriptomics Highlights New Features of the Iron Starvation Response in the Human Pathogen Candida glabrata

Médine Benchouaia , Hugues Ripoche , Mariam Sissoko , Antonin Thiebaut , Jawad Merhej et al.
Frontiers in Microbiology, 2018, 9, pp.2689. ⟨10.3389/fmicb.2018.02689⟩
Journal articles hal-01944268v1
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Transcriptomic analyses during the transition from biomass production to lipid accumulation in the oleaginous yeast yarrowia lipolytica

Nicolas Morin , Julien Cescut , Athanasios Béopoulos , Gaëlle Lelandais , Véronique Le Berre et al.
PLoS ONE, 2011, 6 (11), ⟨10.1371/journal.pone.0027966⟩
Journal articles hal-01191312v1

Iron homeostasisis in C. glabrata at the transcriptomic level

Youfang Zhou-Li , Thomas Denecker , Karine Budin , Cécile Fairhead , Monique Bolotin Fukuhara et al.
20. Congress of the International Society for Human and Animal Mycology (ISHAM 2018), Jun 2018, Amsterdam, Netherlands. Oxford University Press, Medical Mycology, 56 (Suppl. 2), 230 p., 2018, Abstracts ISHAM 2018 - Supplement
Conference poster hal-02734714v1
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Label-free quantitative proteomics in Candida yeast species: technical and biological replicates to assess data reproducibility

Gaëlle Lelandais , Thomas Denecker , Camille Garcia , Nicolas Danila , Thibaut Léger et al.
BMC Research Notes, 2019, 12 (1), pp.470. ⟨10.1186/s13104-019-4505-8⟩
Journal articles hal-02389332v1
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Meet-U: educating through research immersion

Nika Abdollahi , Alexandre Albani , Eric Anthony , Agnes Baud , Mélissa Cardon et al.
PLoS Computational Biology, 2018, 14 (3), pp.1-10. ⟨10.1371/journal.pcbi.1005992⟩
Journal articles hal-01722019v1
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Spatio-temporal dynamics of yeast mitochondrial biogenesis: transcriptional and post-transcriptional mRNA oscillatory modules.

Gaëlle Lelandais , Yann Saint-Georges , Colette Geneix , Liza Al-Shikhley , Geneviève Dujardin et al.
PLoS Computational Biology, 2009, 5 (6), pp.e1000409. ⟨10.1371/journal.pcbi.1000409⟩
Journal articles inserm-00705680v1