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authFullName_s : Jeremy Schmutz

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

Robert Riley , Asaf A. Salamov , Daren W. Brown , Laszlo G. Nagy , Dimitrios Floudas et al.
Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (27), pp.9923-9928. ⟨10.1073/pnas.1400592111⟩
Journal articles hal-01578657v1
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The genome of Eucalyptus grandis

Alexander Myburg , Dario Grattapaglia , Gerald Tuskan , Uffe Hellsten , Richard Hayes et al.
Nature, 2014, 510 (7505), pp.356-362. ⟨10.1038/nature13308⟩
Journal articles hal-02285478v1
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A reference genome for common bean and genome-wide analysis of dual domestications

Jeremy Schmutz , Phillip E. Mcclean , Sujan Mamidi , G. Albert Wu , Steven B. Cannon et al.
Nature Genetics, 2014, 46 (7), pp.707-713. ⟨10.1038/ng.3008⟩
Journal articles hal-02638010v1

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

Emmanuelle Morin , Annegret Kohler , Adam R. Baker , Marie Foulongne-Oriol , Julien Lombard et al.
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (43), pp.17501-17506. ⟨10.1073/pnas.1206847109⟩
Journal articles hal-01267851v1
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The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion

Jeffrey J. Coleman , Steve D. Rounsley , Marianela Rodriguez-Carres , Alan Kuo , Catherine C. Wasmann et al.
PLoS Genetics, 2009, 5 (8), pp.e1000618
Journal articles hal-02664932v1
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The $Phaeodactylum$ genome reveals the evolutionary history of diatom genomes

Chris Bowler , Andrew E. Allen , Jonathan H. Badger , Jane Grimwood , Kamel Jabbari et al.
Nature, 2008, 456 (7410), pp.239-244. ⟨10.1038/nature07410⟩
Journal articles cea-00910244v1
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Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

Richard Dorrell , Alan Kuo , Zoltan Füssy , Elisabeth Richardson , Asaf Salamov et al.
Life Science Alliance, 2022, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩
Journal articles hal-03859139v1

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions

Annabelle A. Haudry , Adrian Platts , Emilio Vello , Douglas Hoen , Mickael Leclercq et al.
Nature Genetics, 2013, 45 (8), pp.891 - 898. ⟨10.1038/ng.2684⟩
Journal articles hal-01907704v1
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Hardwood tree genomics: unlocking woody plant biology

Gerald A. Tuskan , Andrew T. Groover , Jeremy Schmutz , Stephen Paul Difazio , Alexander Myburg et al.
Frontiers in Plant Science, 2018, 9, pp.1-9. ⟨10.3389/fpls.2018.01799⟩
Journal articles hal-02622509v1

Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)

Susan Brawley , Nicolas Blouin , Elizabeth Ficko-Blean , Glen Wheeler , Martin Lohr et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (31), pp.E6361-E6370. ⟨10.1073/pnas.1703088114⟩
Journal articles hal-02950557v1

The Chlamydomonas genome reveals the evolution of key animal and plant functions.

Sabeeha S Merchant , Simon E Prochnik , Olivier Vallon , Elizabeth H Harris , Steven J Karpowicz et al.
Science, 2007, 318 (5848), pp.245-50. ⟨10.1126/science.1143609⟩
Journal articles hal-00198837v1
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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

John L Bowman , Takayuki Kohchi , Katsuyuki T Yamato , Jerry Jenkins , Shengqiang Shu et al.
Cell, 2017, 171 (2), pp.287-304.e15. ⟨10.1016/j.cell.2017.09.030⟩
Journal articles hal-03157918v1

Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.

Alexandra Z Worden , Jae-Hyeok Lee , Thomas Mock , Pierre Rouzé , Melinda P Simmons et al.
Science, 2009, 324 (5924), pp.268-72. ⟨10.1126/science.1167222⟩
Journal articles hal-00693449v1

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution

Daniel Lang , Kristian Ullrich , Florent Murat , Jörg Fuchs , Jerry Jenkins et al.
Plant Journal, 2018, 93 (3), pp.515 - 533. ⟨10.1111/tpj.13801⟩
Journal articles hal-01760352v1

Correction for Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (vol 109, pg 17501, 2012)

Emmanuelle Morin , Annegret Kohler , Adam R. Baker , Marie Foulongne-Oriol , Julien Lombard et al.
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (10), pp.4146-4146. ⟨10.1073/pnas.1300201110⟩
Journal articles hal-01268023v1
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory

Rory J Craig , Sean D Gallaher , Shengqiang Shu , Patrice Salomé , Jerry W Jenkins et al.
2022
Preprints, Working Papers, ... hal-03876006v1

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

Thomas Mock , Robert P Otillar , Jan Strauss , Mark Mcmullan , Pirita Paajanen et al.
Nature, 2017, 541, pp.536-540. ⟨10.1038/nature20803⟩
Journal articles hal-01587937v1
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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

G Albert Wu , Simon Prochnik , Jerry Jenkins , Jérôme Salse , Uffe Hellsten et al.
Nature Biotechnology, 2014, 32 (7), pp.656-662. ⟨10.1038/nbt.2906⟩
Journal articles hal-02285484v1

The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory

Rory Craig , Sean Gallaher , Shengqiang Shu , Patrice Salomé , Jerry Jenkins et al.
The Plant cell, 2017, 94 (3), pp.253-265. ⟨10.1007/s11103-017-0605-9⟩
Journal articles hal-03927369v1

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

Joshua Stein , Yeisoo Yu , Dario Copetti , Derrick Zwickl , Li Zhang et al.
Nature Genetics, 2018, 50 (2), pp.285-296. ⟨10.1038/s41588-018-0040-0⟩
Journal articles hal-02098593v1

The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

Dimitrios Floudas , Manfred Binder , Robert Riley , Kerrie Barry , Robert A. Blanchette et al.
Science, 2012, 336 (6089), pp.1715-1719. ⟨10.1126/science.1221748⟩
Journal articles hal-01268324v1

Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar

Alois Bresson , Véronique V. Jorge , Arnaud A. Dowkiw , Vanina Guérin , Isabelle Bourgait et al.
New Phytologist, 2011, 192 (1), pp.151-163. ⟨10.1111/j.1469-8137.2011.03786.x⟩
Journal articles hal-02652374v1

An integrated genetic and physical map of chromosome XIX in poplar

Alois Bresson , Frederique Bitton , Charlotte C. Renne , Serena Morcx , Véronique V. Jorge et al.
2009 IUFRO Tree Biotechnology Conference, Jun 2009, Whistler, BC, Canada
Conference papers hal-02757493v1

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

Brian Palenik , Jane Grimwood , Andrea Aerts , Pierre Rouzé , Asaf Salamov et al.
Proceedings of the National Academy of Sciences of the United States of America, 2007, 104 (18), pp.7705-7710. ⟨10.1073/pnas.0611046104⟩
Journal articles hal-03160904v1
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The genome sequence of segmental allotetraploid peanut Arachis hypogaea

David Bertioli , Jerry Jenkins , Josh Clevenger , Olga Dudchenko , Dongying Gao et al.
Nature Genetics, 2019, 51 (5), pp.877-884. ⟨10.1038/s41588-019-0405-z⟩
Journal articles hal-02141867v1

The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data

Pierre-François Perroud , Fabian B. Haas , Manuel Hiss , Kristian K. Ullrich , Alessandro Alboresi et al.
Plant Journal, 2018, 95 (1), pp.168-182. ⟨10.1111/tpj.13940⟩
Journal articles hal-02622474v1

The genome of Tetranychus urticae reveals herbivorous pest adaptations

Miodrag Grbic , Thomas van Leeuwen , Richard M. Clark , Stephane Rombauts , Pierre Rouzé et al.
Nature, 2011, 479 (7374), pp.487-492. ⟨10.1038/nature10640⟩
Journal articles hal-02651700v1

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

Ake Olson , Andrea Aerts , Fred Asiegbu , Lassaâd Belbahri , Ourdia Bouzid et al.
New Phytologist, 2012, 194 (4), pp.1001-1013. ⟨10.1111/j.1469-8137.2012.04128.x⟩
Journal articles hal-02649642v1

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication

Luis M. Corrochano , Alan Kuo , Marina Marcet-Houben , Silvia Polaino , Asaf Salamov et al.
Current Biology - CB, 2016, 26 (12), pp.1577-1584. ⟨10.1016/j.cub.2016.04.038⟩
Journal articles hal-01439110v1

The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants

Jo Ann Banks , Tomoaki Nishiyama , Mitsuyasu Hasebe , John Bowman , Michael Gribskov et al.
Science, 2011, 332 (6032), pp.960-963. ⟨10.1126/science.1203810⟩
Journal articles hal-02650822v1