Search - Archive ouverte HAL Access content directly

Filter your results

36 Results
authFullName_s : Kerrie Barry
Image document

Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

Richard Dorrell , Alan Kuo , Zoltan Füssy , Elisabeth Richardson , Asaf Salamov et al.
Life Science Alliance, 2022, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩
Journal articles hal-03859139v1

Reference genome sequence of the model plant Setaria

Jeffrey Bennetzen , Jeremy J. Schmutz , Hao Wang , Ryan Percifield , Jennifer Hawkins et al.
Nature Biotechnology, 2012, 30 (6), pp.555-561. ⟨10.1038/nbt.2196⟩
Journal articles hal-02114330v1

Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2

S. Haridas , R. Albert , M. Binder , J. Bloem , Kurt Labutti et al.
Genome Announcements, 2016, 4 (5), pp.112-122. ⟨10.1128/genomeA.00976-16⟩
Journal articles hal-03508713v1
Image document

Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

Krisztina Krizsán , Éva Almási , Zsolt Merényi , Neha Sahu , Máté Virágh et al.
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (15), pp.7409-7418. ⟨10.1073/pnas.1817822116⟩
Journal articles hal-02587458v1

Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)

Susan Brawley , Nicolas Blouin , Elizabeth Ficko-Blean , Glen Wheeler , Martin Lohr et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (31), pp.E6361-E6370. ⟨10.1073/pnas.1703088114⟩
Journal articles hal-02950557v1
Image document

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

John L Bowman , Takayuki Kohchi , Katsuyuki T Yamato , Jerry Jenkins , Shengqiang Shu et al.
Cell, 2017, 171 (2), pp.287-304.e15. ⟨10.1016/j.cell.2017.09.030⟩
Journal articles hal-03157918v1

Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap ( Lactarius ) mushrooms

Annie Lebreton , Nianwu Tang , Alan Kuo , Kurt Labutti , William Andreopoulos et al.
New Phytologist, 2022, 235 (1), pp.306-319. ⟨10.1111/nph.18143⟩
Journal articles hal-03946660v1

Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus

Shingo Miyauchi , Hayat Hage , Elodie Drula , Laurence Lesage-Meessen , Jean-Guy Berrin et al.
DNA Research, 2020, ⟨10.1093/dnares/dsaa011⟩
Journal articles hal-02868456v1

Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species

Yi-Fei Sun , Annie Lebreton , Jia-Hui Xing , Yu-Xuan Fang , Jing Si et al.
Journal of Fungi, 2022, 8 (3), pp.311. ⟨10.3390/jof8030311⟩
Journal articles hal-03627194v1
Image document

Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay

Hayat Hage , Shingo Miyauchi , Máté Virágh , Elodie Drula , Byoungnam Min et al.
Environmental Microbiology, 2021, ⟨10.1111/1462-2920.15423⟩
Journal articles hal-03226505v1
Image document

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Ronald P. De Vries , Robert Riley , Ad Wiebenga , Guillermo Aguilar-Osorio , Sotiris Amillis et al.
Genome Biology, 2017, 18, ⟨10.1186/s13059-017-1151-0⟩
Journal articles hal-01496186v1

Genetic determinants of endophytism in the Arabidopsis root mycobiome

Fantin Mesny , Shingo Miyauchi , Thorsten Thiergart , Brigitte Pickel , Lea Atanasova et al.
Nature Communications, 2021, 12 (1), pp.7227. ⟨10.1038/s41467-021-27479-y⟩
Journal articles hal-03508738v1
Image document

The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory

Rory J Craig , Sean D Gallaher , Shengqiang Shu , Patrice Salomé , Jerry W Jenkins et al.
Preprints, Working Papers, ... hal-03876006v1
Image document

Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

Tammi C. Vesth , Jane L. Nybo , Sebastian Theobald , Jens C. Frisvad , Thomas O. Larsen et al.
Nature Genetics, 2018, 50 (12), pp.1688-1695. ⟨10.1038/s41588-018-0246-1⟩
Journal articles hal-02094492v1

Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus

Rachel Koch , Gyeong Mee Yoon , Uma Aryal , Kathleen Lail , Mojgan Amirebrahimi et al.
Current Biology - CB, 2021, 31 (17), pp.3905-3914.e6. ⟨10.1016/j.cub.2021.06.033⟩
Journal articles hal-03353944v1

Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

Brian Looney , Shingo Miyauchi , Emmanuelle Morin , Elodie Drula , Pierre Emmanuel Courty et al.
New Phytologist, 2022, 233 (5), pp.2294-2309. ⟨10.1111/nph.17892⟩
Journal articles hal-03606184v1
Image document

Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12

Jill Gaskell , Phil Kersten , Luis Larrondo , Paulo Canessa , Diego Martínez et al.
Genomics Data, 2017, 14, pp.21-23. ⟨10.1016/j.gdata.2017.08.003⟩
Journal articles hal-01802856v1
Image document

The genome of Eucalyptus grandis

Alexander Myburg , Dario Grattapaglia , Gerald Tuskan , Uffe Hellsten , Richard Hayes et al.
Nature, 2014, 510 (7505), pp.356-362. ⟨10.1038/nature13308⟩
Journal articles hal-02285478v1
Image document

A reference genome for common bean and genome-wide analysis of dual domestications

Jeremy Schmutz , Phillip E. Mcclean , Sujan Mamidi , G. Albert Wu , Steven B. Cannon et al.
Nature Genetics, 2014, 46 (7), pp.707-713. ⟨10.1038/ng.3008⟩
Journal articles hal-02638010v1

The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory

Rory Craig , Sean Gallaher , Shengqiang Shu , Patrice Salomé , Jerry Jenkins et al.
The Plant cell, 2017, 94 (3), pp.253-265. ⟨10.1007/s11103-017-0605-9⟩
Journal articles hal-03927369v1

Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels

Weihua Wu , Ryan Davis , Mary Bao Tran-Gyamfi , Alan Kuo , Kurt Labutti et al.
Applied Microbiology and Biotechnology, 2017, 101 (6), pp.2603 - 2618. ⟨10.1007/s00253-017-8091-1⟩
Journal articles hal-01802800v1
Image document

Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi

Dániel Knapp , Julianna Németh , Kerrie Barry , Matt Hainaut , Bernard Henrissat et al.
Scientific Reports, 2018, 8 (1), pp.6321. ⟨10.1038/s41598-018-24686-4⟩
Journal articles hal-02094592v1

Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions

Abbot Oghenekaro , Andriy Kovalchuk , Tommaso Raffaello , Susana Camarero , Markus Gressler et al.
Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-62150-4⟩
Journal articles hal-02990636v1

Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

Gang Wu , Shingo Miyauchi , Emmanuelle Morin , Alan Kuo , Elodie Drula et al.
New Phytologist, 2021, 10 (4), ⟨10.1111/nph.17858⟩
Journal articles hal-03473169v1

The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

Dimitrios Floudas , Manfred Binder , Robert Riley , Kerrie Barry , Robert A. Blanchette et al.
Science, 2012, 336 (6089), pp.1715-1719. ⟨10.1126/science.1221748⟩
Journal articles hal-01268324v1
Image document

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

Claude Murat , Thibaut Payen , Benjamin Noël , Alan Kuo , Emmanuelle Morin et al.
Nature Ecology & Evolution, 2018, 2 (12), pp.1956-1965. ⟨10.1038/s41559-018-0710-4⟩
Journal articles hal-02094494v1

Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers

Florian Barbi , Annegret Kohler , Kerrie Barry , Preetisri Baskaran , Chris Daum et al.
Environmental Microbiology, 2019, 22 (3), pp.1089-1103. ⟨10.1111/1462-2920.14873⟩
Journal articles hal-02612520v1

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Shingo Miyauchi , Enikő Kiss , Alan Kuo , Elodie Drula , Annegret Kohler et al.
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-18795-w⟩
Journal articles hal-03082507v1

Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina

Teeratas Kijpornyongpan , Stephen Mondo , Kerrie Barry , Laura Sandor , Juna Lee et al.
Molecular Biology and Evolution, 2018, 35 (8), pp.1840-1854. ⟨10.1093/molbev/msy072⟩
Journal articles hal-02094578v1

The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data

Pierre-François Perroud , Fabian B. Haas , Manuel Hiss , Kristian K. Ullrich , Alessandro Alboresi et al.
Plant Journal, 2018, 95 (1), pp.168-182. ⟨10.1111/tpj.13940⟩
Journal articles hal-02622474v1