ATTRACT and PTOOLS: Open Source Programs for Protein–Protein Docking
Sebastian Schneider
,
Adrien Saladin
,
Sébastien Fiorucci
,
Chantal Prévost
,
Martin Zacharias
et al.
Springer, New York, NY.
Computational Drug Discovery and Design , 819, pp.221-232, 2012, Methods in Molecular Biology (Methods and Protocols),
⟨10.1007/978-1-61779-465-0_15⟩
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hal-02545543v1
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Exploiting Antigenic Diversity for Vaccine Design
Marco Soriani
,
Pierre Petit
,
Renata Grifantini
,
Roberto Petracca
,
Giovanni Gancitano
et al.
Journal articles
hal-02545563v1
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Electrostatic profiles of targets NMB0033 and CT043
Sébastien Fiorucci
,
Martin Zacharias
BacAbs meeting , Mar 2008, Milan, Italy
Conference papers
hal-02546318v1
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Modeling the early stage of DNA sequence recognition within RecA nucleoprotein filaments.
Adrien Saladin
,
Christopher Amourda
,
Pierre Poulain
,
Nicolas Férey
,
Marc Baaden
et al.
Journal articles
hal-00533099v1
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A folding switch regulates interleukin 27 biogenesis and secretion of its α-subunit as a cytokine
Stephanie Müller
,
Antonie Friedl
,
Isabel Aschenbrenner
,
Julia Esser-von Bieren
,
Martin Zacharias
et al.
Proceedings of the National Academy of Sciences of the United States of America , 2019, 116 (5), pp.1585-1590.
⟨10.1073/pnas.1816698116⟩
Journal articles
hal-03994426v1
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Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.
Sarel J Fleishman
,
Timothy A Whitehead
,
Eva-Maria Strauch
,
Jacob E Corn
,
Sanbo Qin
et al.
Journal articles
inria-00637848v1
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Altered fibrin clot structure and dysregulated fibrinolysis contribute to thrombosis risk in severe COVID-19
Malgorzata Wygrecka
,
Anna Birnhuber
,
Benjamin Seeliger
,
Laura Michalick
,
Oleg Pak
et al.
Journal articles
hal-03873011v1
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Update of the ATTRACT force field for the prediction of protein-protein binding affinity
Jean-Baptiste Chéron
,
Martin Zacharias
,
Serge Antonczak
,
Sébastien Fiorucci
Journal articles
hal-02545204v1
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Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions
Rocco Moretti
,
Sarel J Fleishman
,
Rudi Agius
,
Mieczyslaw Torchala
,
Paul A. Bates
et al.
Proteins - Structure, Function and Bioinformatics , 2013, 81 (11), pp.1980 - 1987.
⟨10.1002/prot.24356⟩
Journal articles
hal-00905794v1
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Antigen/Antibody docking improvement including hotspot and solvation energy
Sébastien Fiorucci
,
Martin Zacharias
BacAbs meeting , Jan 2008, Barcelone, Spain
Conference papers
hal-02546320v1
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Altered fibrin clot structure contributes to thrombosis risk in severe COVID-19
Malgorzata Wygrecka
,
Anna Birnhuber
,
Benjamin Seeliger
,
Laura Michalick
,
Oleg Pak
et al.
2021
Preprints, Working Papers, ...
hal-03438497v1
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An Integrative Approach to the Study of Filamentous Oligomeric Assemblies, with Application to RecA
Benjamin Boyer
,
Johann Ezelin
,
Pierre Poulain
,
Adrien Saladin
,
Martin Zacharias
et al.
Journal articles
hal-01230983v1
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PTools: an opensource molecular docking library.
Adrien Saladin
,
Sébastien Fiorucci
,
Pierre Poulain
,
Chantal Prévost
,
Martin Zacharias
et al.
Journal articles
inserm-00474185v1
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Modeling large protein–glycosaminoglycan complexes using a fragment‐based approach
Sergey Samsonov
,
Martin Zacharias
,
Isaure Chauvot de Beauchêne
Journal articles
hal-02088192v1
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Binding site prediction and improved scoring during flexible protein-protein docking with ATTRACT
Sébastien Fiorucci
,
Martin Zacharias
Proteins - Structure, Function and Bioinformatics , 2010, 78 (15), pp.3131-3139.
⟨10.1002/prot.22808⟩
Journal articles
istex
hal-02545568v1
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Fragment based modeling of protein-GAG complexes
Isaure Chauvot de Beauchêne
,
Sergey A Samsonov
,
Martin Zacharias
GGMM 2017 - 20e congrès du Groupe de Graphisme et Modelisation Moleculaire , May 2017, Reims, France. pp.1
Conference poster
hal-01927283v1
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Protein-protein and peptide-protein docking and refinement using ATTRACT in CAPRI
Christina Eva Maria Schindler
,
Isaure Chauvot de Beauchêne
,
Sjoerd Jacob de Vries
,
Martin Zacharias
Journal articles
hal-01505867v1
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Prediction of Protein-Protein Interaction Sites Using Electrostatic Desolvation Profiles
Sébastien Fiorucci
,
Martin Zacharias
Journal articles
hal-02545575v1
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Blind prediction of interfacial water positions in CAPRI
Marc F. Lensink
,
Aiain H. Moal
,
Paul A. Bates
,
Panagiotis L. Kastritis
,
Adrien S. J. Melquiond
et al.
Journal articles
hal-00880345v1
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Coarse-grained and atomic resolution biomolecular docking with the ATTRACT approach
Glenn Glashagen
,
Sjoerd de Vries
,
Urszula Uciechowska-Kaczmarzyk
,
Sergey A. Samsonov
,
Samuel Murail
et al.
Journal articles
hal-03201555v1
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Rapid Design of Knowledge-Based Scoring Potentials for Enrichment of Near-Native Geometries in Protein-Protein Docking
Alexander Sasse
,
Sjoerd Jacob de Vries
,
Christina Eva Maria Schindler
,
Isaure Chauvot de Beauchêne
,
Martin Zacharias
et al.
Journal articles
hal-01505866v1
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Fragment-based modeling of protein-bound ssRNA
Isaure Chauvot de Beauchêne
,
Sjoerd J de Vries
,
Martin Zacharias
ECCB 2016: The 15th European Conference on Computational Biology , Sep 2016, Den Haag, Netherlands. 2016
Conference poster
hal-01573352v1
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Computational Antigenic Epitope Prediction by Calculating Electrostatic Desolvation Penalties of Protein Surfaces
Sébastien Fiorucci
,
Martin Zacharias
Book sections
hal-02545222v1
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