TOXsIgN: a cross-species repository for toxicogenomic signatures
Thomas A. Darde
,
Pierre Gaudriault
,
Rémi Béranger
,
Clement Lancien
,
Annaelle Caillarec-Joly
et al.
Journal articles
hal-01863047v1
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FISH-quant: automatic counting of transcripts in 3D FISH images
Florian Mueller
,
Adrien Senecal
,
Katjana Tantale
,
Hervé Marie-Nelly
,
Nathalie Ly
et al.
Journal articles
pasteur-01622707v1
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e-Science in France, a Life science Western story
Yvan Le Bras
,
Aurélien Roult
,
Cyril Monjoeaud
,
Bahin Mathieu
,
Olivier Quenez
et al.
Galaxy Community Conference (GCC2014) , Jun 2014, Baltimore, United States
Conference poster
hal-01102432v1
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Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities
Sarah Cohen-Boulakia
,
Khalid Belhajjame
,
Olivier Collin
,
Jérôme Chopard
,
Christine Froidevaux
et al.
Journal articles
hal-01516082v1
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An expressed sequence tag analysis of thallus and regenerating protoplasts of Chondrus crispus (Gigartinales, Rhodophyceae)
Jonas Collén
,
Vincent Roeder
,
Sylvie Rousvoal
,
Olivier Collin
,
Bernard Kloareg
et al.
Journal of Phycology , 2006
Journal articles
inria-00327543v1
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Spatiotemporal dynamics of actin-rich adhesion microdomains: influence of substrate flexibility.
Olivier Collin
,
Philippe Tracqui
,
Angélique Stephanou
,
Yves Usson
,
Jocelyne Clément-Lacroix
et al.
Journal articles
inserm-00173037v1
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The BioMart community portal: an innovative alternative to large, centralized data repositories
Damian Smedley
,
Syed Haider
,
Steffen Durinck
,
Luca Pandini
,
Paolo Provero
et al.
Journal articles
hal-01146849v1
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BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ
Anthony Bretaudeau
,
Cyril Monjeaud
,
Yvan Le Bras
,
Fabrice Legeai
,
Olivier Collin
et al.
Journal articles
hal-01240449v1
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The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community
Thomas Darde
,
Estelle Lecluze
,
Aurélie Lardenois
,
Isabelle Stévant
,
Nathan Alary
et al.
Journal articles
hal-02015545v1
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High-resolution profiling of novel transcribed regions during rat spermatogenesis
Frédéric Chalmel
,
Aurélie Lardenois
,
Bertrand Evrard
,
Antoine D. Rolland
,
Olivier Sallou
et al.
Journal articles
hal-01063924v1
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Dr Motifs: a web resource for pattern matching and discovery
Anthony Bretaudeau
,
Olivier Collin
JOBIM 2012 , Jul 2012, Rennes, France
Conference poster
hal-01102439v1
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The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.
Thomas A Darde
,
Olivier Sallou
,
Emmanuelle Becker
,
Bertrand Evrard
,
Cyril Monjoeaud
et al.
Journal articles
hal-01146120v1
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Présentation des Centres Bioinformatiques Régionaux : RENABI-GO
Tiphaine Martin
,
Christophe C. Caron
,
Olivier Collin
Journées GRISBI 2011 : scientifiques et technologique , Christophe Blanchet and Christophe Caron and Olivier Collin and Stéphane Delmotte and Clément Gauthey and Tiphaine Martin and Franck Samson and Bruno Spataro, May 2011, Lyon, France
Conference papers
inria-00614475v1
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BioDesc : gestion d'un entrepôt multiformat de descriptions de ressources bioinformatiques
Philippe Picouet
,
Z. Doughi
,
Loraine Brillet
,
Erwan Corre
,
Christophe Caron
et al.
JOBIM , Sep 2010, Montpellier, France
Conference papers
inria-00540815v1
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Integrating GALAXY workflows in a metadata management environment
François Moreews
,
Yvan Le Bras
,
Olivier Dameron
,
Cyril Monjeaud
,
Olivier Collin
et al.
Galaxy Community Conference , Jul 2014, Baltimore, United States
Conference papers
hal-01093058v1
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TOXsIgN – un espace de dépôt publique dédié aux signatures toxicologiques
Thomas Alain Darde
,
Pierre Gaudriault
,
Rémi Béranger
,
Lancien Clément
,
Annaelle Caillarec-Joly
et al.
10 ans PNREST, ANSES , Nov 2016, Paris, France
Conference poster
hal-02445079v1
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BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network
Marc Wessner
,
Martin Senger
,
Franck Samson
,
Philippe Picouet
,
François Moreews
et al.
Jobim (Journées Ouvertes Biologie Informatique Mathématiques) , Jun 2008, Lille, France
Conference papers
inria-00327528v1
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Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
Thomas C. Mathers
,
Yazhou Chen
,
Gemy Kaithakottil
,
Fabrice Legeai
,
Sam T. Mugford
et al.
Journal articles
hal-01500475v1
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RENABI GRISBI Infrastructure Distribuée pour la Bioinformatique
Christophe Blanchet
,
Clément Gauthey
,
Christophe C. Caron
,
Olivier Collin
,
Stephane Delmotte
et al.
JOBIM 2011 - Journées Ouvertes Biologie Informatique Mathématique , Jun 2011, Paris, France
Conference papers
hal-00640007v1
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PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution
Stéphane Mahé
,
Marie Duhamel
,
Thomas Le Calvez
,
Laëtitia Guillot
,
Ludmila Sarbu
et al.
Journal articles
hal-00756250v1
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PepPSy: a web server to prioritize gene products in experimental and biocuration workflows
Olivier Sallou
,
Paula D. Duek
,
Thomas A. Darde
,
Olivier Collin
,
Lydie Lane
et al.
Journal articles
hal-01342472v1
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IFB-Biosphère : Services cloud pour l'analyse des données des sciences de la vie
Christophe Blanchet
,
Olivier Collin
,
Matéo Boudet
,
Stéphane Delmotte
,
Hervé Gilquin
et al.
Journées RESeaux - JRES 2019 , Dec 2019, Dijon, France
Conference papers
hal-03297018v1
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BioMAJ: a flexible framework for databanks synchronization and processing
Olivier Filangi
,
Yoann Beausse
,
Anthony Assi
,
Ludovic Legrand
,
Jean-Marc Larré
et al.
Journal articles
inria-00327502v1
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A tale of genome, annotations, metabolism and phylogenomics: the pea aphid genome resources
Fabrice Legeai
,
Stefano Colella
,
Jaime Huerta-Cepas
,
Jean-Pierre Gauthier
,
Augusto Vellozo
et al.
10. Cold Spring Harbor Laboratory / Wellcome Trust conference on Genome Informatics , Sep 2010, Hinxton, United Kingdom. 1 p., 2010
Conference poster
hal-01231276v1
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Automatic update of reference data in Galaxy using BioMAJ.
Anthony Bretaudeau
,
Yvan Le Bras
,
Cyril Monjeaud
,
Olivier Collin
Galaxy Day 2014 , Institut Français de Bioinformatique, Dec 2014, Paris, France
Conference papers
hal-01102421v1
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The bio.tools registry of software tools and data resources for the life sciences
Jon Ison
,
Hans Ienasescu
,
Piotr Chmura
,
Emil Rydza
,
Hervé Ménager
et al.
Journal articles
hal-02408472v1
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LIMLE, a New Molecule Over-Expressed following Activation, Is Involved in the Stimulatory Properties of Dendritic Cells
Laëtitia Le Texier
,
Justine Durand
,
Amélie Lavault
,
Philippe Hulin
,
Olivier Collin
et al.
Journal articles
hal-01093223v1
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An application suite based on the IFB Container as a Service platform
François Moreews
,
Olivier Sallou
,
Olivier Collin
ECCB 2016 (Elixir Talks) , ISCB, Sep 2016, Den Haag, Netherlands
Conference papers
hal-01394295v1
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LIME, a new molecule associated with cytoskeleton is involved in stimulatory properties of DC
Laëtitia Le Texier
,
Justine Durand
,
Amélie Lavault
,
Philippe Hulin
,
Olivier Collin
et al.
Journal articles
hal-01183591v1
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A curated Domain centric shared Docker registry linked to the Galaxy toolshed
François Moreews
,
Olivier Sallou
,
Yvan Le Bras
,
Grosjean Marie
,
Cyril Monjeaud
et al.
Galaxy Community Conference 2015 , Jul 2015, Norwich, United Kingdom
Conference papers
hal-01160514v1
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