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authFullName_s : Olivier Collin
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TOXsIgN: a cross-species repository for toxicogenomic signatures

Thomas A. Darde , Pierre Gaudriault , Rémi Béranger , Clement Lancien , Annaelle Caillarec-Joly et al.
Bioinformatics, 2018, 34 (12), pp.2116-2122. ⟨10.1093/bioinformatics/bty040⟩
Journal articles hal-01863047v1
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FISH-quant: automatic counting of transcripts in 3D FISH images

Florian Mueller , Adrien Senecal , Katjana Tantale , Hervé Marie-Nelly , Nathalie Ly et al.
Nature Methods, 2013, 10 (4), pp.277 - 278. ⟨10.1038/nmeth.2406⟩
Journal articles pasteur-01622707v1

e-Science in France, a Life science Western story

Yvan Le Bras , Aurélien Roult , Cyril Monjoeaud , Bahin Mathieu , Olivier Quenez et al.
Galaxy Community Conference (GCC2014), Jun 2014, Baltimore, United States
Conference poster hal-01102432v1
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Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

Sarah Cohen-Boulakia , Khalid Belhajjame , Olivier Collin , Jérôme Chopard , Christine Froidevaux et al.
Future Generation Computer Systems, 2017, 75, pp.284-298. ⟨10.1016/j.future.2017.01.012⟩
Journal articles hal-01516082v1

An expressed sequence tag analysis of thallus and regenerating protoplasts of Chondrus crispus (Gigartinales, Rhodophyceae)

Jonas Collén , Vincent Roeder , Sylvie Rousvoal , Olivier Collin , Bernard Kloareg et al.
Journal of Phycology, 2006
Journal articles inria-00327543v1

Spatiotemporal dynamics of actin-rich adhesion microdomains: influence of substrate flexibility.

Olivier Collin , Philippe Tracqui , Angélique Stephanou , Yves Usson , Jocelyne Clément-Lacroix et al.
Journal of Cell Science, 2006, 119 (Pt 9), pp.1914-25. ⟨10.1242/jcs.02838⟩
Journal articles inserm-00173037v1
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The BioMart community portal: an innovative alternative to large, centralized data repositories

Damian Smedley , Syed Haider , Steffen Durinck , Luca Pandini , Paolo Provero et al.
Nucleic Acids Research, 2015, 43 (W1), pp.W589-W598. ⟨10.1093/nar/gkv350⟩
Journal articles hal-01146849v1
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BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ

Anthony Bretaudeau , Cyril Monjeaud , Yvan Le Bras , Fabrice Legeai , Olivier Collin et al.
GigaScience, 2015, 4, pp.22. ⟨10.1186/s13742-015-0063-8⟩
Journal articles hal-01240449v1
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The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community

Thomas Darde , Estelle Lecluze , Aurélie Lardenois , Isabelle Stévant , Nathan Alary et al.
Bioinformatics, 2019, 35 (17), pp.3133-3139. ⟨10.1093/bioinformatics/btz047⟩
Journal articles hal-02015545v1

High-resolution profiling of novel transcribed regions during rat spermatogenesis

Frédéric Chalmel , Aurélie Lardenois , Bertrand Evrard , Antoine D. Rolland , Olivier Sallou et al.
Biology of Reproduction, 2014, 91 (1), pp.5. ⟨10.1095/biolreprod.114.118166⟩
Journal articles hal-01063924v1

Dr Motifs: a web resource for pattern matching and discovery

Anthony Bretaudeau , Olivier Collin
JOBIM 2012, Jul 2012, Rennes, France
Conference poster hal-01102439v1
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The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.

Thomas A Darde , Olivier Sallou , Emmanuelle Becker , Bertrand Evrard , Cyril Monjoeaud et al.
Nucleic Acids Research, 2015, 43 (W1), pp.8. ⟨10.1093/nar/gkv345⟩
Journal articles hal-01146120v1

Présentation des Centres Bioinformatiques Régionaux : RENABI-GO

Tiphaine Martin , Christophe C. Caron , Olivier Collin
Journées GRISBI 2011 : scientifiques et technologique, Christophe Blanchet and Christophe Caron and Olivier Collin and Stéphane Delmotte and Clément Gauthey and Tiphaine Martin and Franck Samson and Bruno Spataro, May 2011, Lyon, France
Conference papers inria-00614475v1

BioDesc : gestion d'un entrepôt multiformat de descriptions de ressources bioinformatiques

Philippe Picouet , Z. Doughi , Loraine Brillet , Erwan Corre , Christophe Caron et al.
JOBIM, Sep 2010, Montpellier, France
Conference papers inria-00540815v1

Integrating GALAXY workflows in a metadata management environment

François Moreews , Yvan Le Bras , Olivier Dameron , Cyril Monjeaud , Olivier Collin et al.
Galaxy Community Conference, Jul 2014, Baltimore, United States
Conference papers hal-01093058v1

TOXsIgN – un espace de dépôt publique dédié aux signatures toxicologiques

Thomas Alain Darde , Pierre Gaudriault , Rémi Béranger , Lancien Clément , Annaelle Caillarec-Joly et al.
10 ans PNREST, ANSES, Nov 2016, Paris, France
Conference poster hal-02445079v1

BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network

Marc Wessner , Martin Senger , Franck Samson , Philippe Picouet , François Moreews et al.
Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jun 2008, Lille, France
Conference papers inria-00327528v1
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Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford et al.
Genome Biology, 2017, 18 (1), pp.27. ⟨10.1186/s13059-016-1145-3⟩
Journal articles hal-01500475v1

RENABI GRISBI Infrastructure Distribuée pour la Bioinformatique

Christophe Blanchet , Clément Gauthey , Christophe C. Caron , Olivier Collin , Stephane Delmotte et al.
JOBIM 2011 - Journées Ouvertes Biologie Informatique Mathématique, Jun 2011, Paris, France
Conference papers hal-00640007v1
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PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution

Stéphane Mahé , Marie Duhamel , Thomas Le Calvez , Laëtitia Guillot , Ludmila Sarbu et al.
PLoS ONE, 2012, 7 (9), pp.e43117. ⟨10.1371/journal.pone.0043117⟩
Journal articles hal-00756250v1

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows

Olivier Sallou , Paula D. Duek , Thomas A. Darde , Olivier Collin , Lydie Lane et al.
Database - The journal of Biological Databases and Curation, 2016, 2016, pp.baw070. ⟨10.1093/database/baw070⟩
Journal articles hal-01342472v1
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IFB-Biosphère : Services cloud pour l'analyse des données des sciences de la vie

Christophe Blanchet , Olivier Collin , Matéo Boudet , Stéphane Delmotte , Hervé Gilquin et al.
Journées RESeaux - JRES 2019, Dec 2019, Dijon, France
Conference papers hal-03297018v1
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BioMAJ: a flexible framework for databanks synchronization and processing

Olivier Filangi , Yoann Beausse , Anthony Assi , Ludovic Legrand , Jean-Marc Larré et al.
Bioinformatics, 2008, 24 (16), pp.1823-1825. ⟨10.1093/bioinformatics/btn325⟩
Journal articles inria-00327502v1
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A tale of genome, annotations, metabolism and phylogenomics: the pea aphid genome resources

Fabrice Legeai , Stefano Colella , Jaime Huerta-Cepas , Jean-Pierre Gauthier , Augusto Vellozo et al.
10. Cold Spring Harbor Laboratory / Wellcome Trust conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom. 1 p., 2010
Conference poster hal-01231276v1

Automatic update of reference data in Galaxy using BioMAJ.

Anthony Bretaudeau , Yvan Le Bras , Cyril Monjeaud , Olivier Collin
Galaxy Day 2014, Institut Français de Bioinformatique, Dec 2014, Paris, France
Conference papers hal-01102421v1
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The registry of software tools and data resources for the life sciences

Jon Ison , Hans Ienasescu , Piotr Chmura , Emil Rydza , Hervé Ménager et al.
Genome Biology, 2019, 20 (164), pp.1-4. ⟨10.1186/s13059-019-1772-6⟩
Journal articles hal-02408472v1

LIMLE, a New Molecule Over-Expressed following Activation, Is Involved in the Stimulatory Properties of Dendritic Cells

Laëtitia Le Texier , Justine Durand , Amélie Lavault , Philippe Hulin , Olivier Collin et al.
PLoS ONE, 2014, pp.10. ⟨10.1371/journal.pone.0093894⟩
Journal articles hal-01093223v1

An application suite based on the IFB Container as a Service platform

François Moreews , Olivier Sallou , Olivier Collin
ECCB 2016 (Elixir Talks) , ISCB, Sep 2016, Den Haag, Netherlands
Conference papers hal-01394295v1

LIME, a new molecule associated with cytoskeleton is involved in stimulatory properties of DC

Laëtitia Le Texier , Justine Durand , Amélie Lavault , Philippe Hulin , Olivier Collin et al.
PLoS ONE, 2014, pp.10. ⟨10.1371/journal.pone.0093894⟩
Journal articles hal-01183591v1
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A curated Domain centric shared Docker registry linked to the Galaxy toolshed

François Moreews , Olivier Sallou , Yvan Le Bras , Grosjean Marie , Cyril Monjeaud et al.
Galaxy Community Conference 2015, Jul 2015, Norwich, United Kingdom
Conference papers hal-01160514v1