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An Improved Assembly of the Diploid ‘Regina’ Sweet Cherry Genome

Loïck Le Dantec , Nabil Girollet , Jerome Gouzy , Erika Sallet , Mathieu Fouche et al.
Plant & Animal Genome Conference XXVII, Jan 2019, San Diego, United States. , pp.PO1193, 2019, Plant & Animal Genome Conference XXVII
Conference poster hal-02570057v1

Genome sequence of white lupin, a model to study root developmental adaptations.

Barbara Hufnagel , William Marande , Erika Sallet , Sandrine Arribat , Hélène Bergès et al.
Journées Inter Labex Fév 2018, Feb 2018, Montpellier, France
Conference papers hal-02954638v1

A laser dissection-RNAseq analysis highlights the activation of cytokinin pathways by nod factors in the Medicago truncatula root epidermis

Marie-Françoise Jardinaud , Stephane Boivin , Nathalie N. Rodde , Olivier Catrice , Anna Kisiala et al.
Plant Physiology, 2016, 171 (3), pp.2256-2276. ⟨10.1104/pp.16.00711⟩
Journal articles hal-02639350v1

High quality genome sequence reveals important events during domestication of White Lupin

B. Hufnagel , A. Marques , Erika Sallet , William Marande , A. Soriano et al.
9 th International Conference on Legume Genetics and Genomics (ICLGG 2019), Let's harness the potential of legumes, May 2019, Dijon, France
Conference papers hal-02735166v1
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High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

Barbara Hufnagel , André Marques , Alexandre Soriano , Laurence Marquès , Fanchon Divol et al.
Nature Communications, 2020, 11 (1), pp.492. ⟨10.1038/s41467-019-14197-9⟩
Journal articles hal-02460008v1
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Genome sequence of the cluster root forming white lupin;

Barbara Hufnagel , André Marques , Alexandre Soriano , Laurence Marquès , Fanchon Divol et al.
Preprints, Working Papers, ... hal-02790529v1

Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules.

Christine Lelandais-Brière , Loreto Naya , Erika Sallet , Fanny Calenge , Florian Frugier et al.
The Plant cell, 2009, 21 (9), pp.2780-96. ⟨10.1105/tpc.109.068130⟩
Journal articles hal-00856243v1
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Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root- knot nematode

Georgios Koutsovoulos , Marine Poullet , Abdelnaser Elashry , Erika Sallet , Martine da Rocha et al.
Scientific Data , 2020, 7 (1), pp.324. ⟨10.1038/s41597-020-00666-0⟩
Journal articles hal-02972492v1

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

Pierre Abad , Jerome Gouzy , Jean-Marc Aury , Philippe Castagnone , Etienne Danchin et al.
Nature Biotechnology, 2008, 26 (8), pp.909-915. ⟨10.1038/nbt.1482⟩
Journal articles hal-01189285v1

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

Hélène Badouin , Jerome Gouzy , Christopher Grassa , Florent Murat , S Evan Staton et al.
Nature, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩
Journal articles hal-01603287v1
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Bradyrhizobium diazoefficiens USDA110 Nodulation of Aeschynomene afraspera Is Associated with Atypical Terminal Bacteroid Differentiation and Suboptimal Symbiotic Efficiency

Quentin Nicoud , Florian Lamouche , Anaïs Chaumeret , Thierry Balliau , Romain Le Bars et al.
Journal articles hal-03303052v1
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The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication

Hélène E Badouin , Amandine Velt , François Gindraud , Timothée Flutre , Vincent Dumas et al.
Genome Biology, 2020, 21 (1), pp.223. ⟨10.1186/s13059-020-02131-y⟩
Journal articles hal-02946414v1

Development of genomic resources for Medicago truncatula and related legume crops

Frederic Debellé , Marion Verdenaud , Anne-Marie Dudez , Nicolas Samson , Olivier Saurat et al.
Model Legume Congress 2011, Institut National Polytechnique (Toulouse) (Toulouse INP). Castanet Tolosan, FRA., May 2011, Sainte Maxime, France
Conference papers hal-02746654v1

Genomic resources for functional analysis in Medicago truncatula and related crop species

Frederic Debellé , C. Belser , J.M. Aury , K. Labadie , Brice Roux et al.
6. International Conference on Legume Genetics and Genomics, International Crops Research Institute for the Semi-Arid Tropics, CGIAR (ICRISAT). Patancheru, IND., Oct 2012, Hyderabad, India
Conference papers hal-02747944v1

Long ncRNAs and epigenetic regulations are attractive candidate elements for the orchestration of symbiotic gene expression in M. truncatula.

Yann Pecrix , S Evan Staton , Erika Sallet , Christine Lelandais Briere , Sandra Moreau et al.
International plant epigenetics symposium, ERC (European Research Council) and the RFI Objectif Végétal regional programme, Oct 2018, Angers, France
Conference papers hal-03355269v1
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Lipid exchanges drove the evolution of mutualism during plant terrestrialization

Mélanie K Rich , Nicolas Vigneron , Cyril Libourel , Jean Keller , Xue Li et al.
Science, 2021, 372 (6544), pp.864-868. ⟨10.1126/science.abg0929⟩
Journal articles hal-03233313v1
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Next-Generation Annotation of Prokaryotic Genomes with EuGene-P: Application to Sinorhizobium meliloti 2011

Erika Sallet , Brice Roux , Laurent Sauviac , M.-F. Jardinaud , S. Carrere et al.
DNA Research, 2013, 20 (4), pp.339-353. ⟨10.1093/dnares/dst014⟩
Journal articles hal-03082947v1
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The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome.

Damien Formey , Erika Sallet , Christine Lelandais-Brière , Cécile Ben , Pilar Bustos-Sanmamed et al.
Genome Biology, 2014, 15 (9), pp.457. ⟨10.1186/s13059-014-0457-4⟩
Journal articles hal-02635888v1
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A High Quality Draft Assembly of the Diploid 'Regina' Sweet Cherry Genome

Loick Le Dantec , Nabil Girollet , Mathieu Fouche , Jerome Gouzy , Erika Sallet et al.
Plant & Animal Genome Conference XXVI, Jan 2018, San Diego, United States
Conference poster hal-01865005v1

Reprogramming of DNA methylation is critical for nodule development in Medicago truncatula.

Carine Satge , Sandra Moreau , Erika Sallet , Gaëlle Lefort , Marie-Christine Auriac et al.
Nature Plants, 2016, 2, pp.16166. ⟨10.1038/nplants.2016.166⟩
Journal articles hal-02636585v1
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DNA demethylation and hypermethylation are both required for late nodule development in Medicago

Yann Pecrix , Erika Sallet , Sandra Moreau , O Bouchez , Sébastien Carrere et al.
Nature Plants, 2022, 8 (7), pp.741-749. ⟨10.1038/s41477-022-01188-w⟩
Journal articles hal-03728475v1

Bradyrhizobium diazoefficiens USDA110 nodulation of Aeschynomene afraspera is associated with atypical terminal bacteroid differentiation and suboptimal symbiotic efficiency

Quentin Nicoud , Florian Lamouche , Anaïs Chaumeret , Thierry Balliau , Romain Le Bars et al.
Preprints, Working Papers, ... hal-03107432v1
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Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes

Romain Blanc-Mathieu , Laetitia Zurletto , Jean-Marc Aury , Martine da Rocha , Jerome Gouzy et al.
PLoS Genetics, 2017, 13 (6), pp.e1006777. ⟨10.1371/journal.pgen.1006777⟩
Journal articles hal-01602779v1

From hosts to symbionts: integrated gene prediction for prokaryotic genomes using EuGene

Erika Sallet , Jerome Gouzy , Brice Roux , Delphine Capela , Laurent Sauviac et al.
XX. PAG Plant & Animal Genome, Jan 2012, San-Diego, United States
Conference papers hal-02807348v1
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A phase-resolved, chromosome-scale de novo assembly of the diploid 'Regina' sweet cherry genome.

Loïck Le Dantec , Nabil Girollet , Jérôme Gouzy , Erika Sallet , Armel Donkpegan et al.
10th International Rosaceae Genomics Conference (RGC 10), Dec 2020, Barcelone, Spain
Conference poster hal-03318885v1
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Multiple recent horizontal transfers of a large genomic region in cheese making fungi

Kevin Cheeseman , Jeanne Ropars , Pierre Renault , Joelle Dupont , Jerome Gouzy et al.
Nature Communications, 2014, 5 (5), pp.2876. ⟨10.1038/ncomms3876⟩
Journal articles hal-01302473v1

The polyploid genome of the mitotic parthenogenetic root-knot nematode Meloidogyne enterolobii

Georgios Koutsovoulos , Marine Poullet , Abdelnaser El Ashry , Djampa Kozlowski , Erika Sallet et al.
Preprints, Working Papers, ... hal-02788762v1

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

Brice Roux , Nathalie Rodde , Marie-Françoise Jardinaud , Ton Timmers , Laurent Sauviac et al.
Plant Journal, 2014, 77 (6), pp.817-837. ⟨10.1111/tpj.12442⟩
Journal articles hal-03082945v1
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Effector polymorphisms of the sunflower downy mildew pathogen Plasmopara Halstedii and their use to identify pathotypes from field isolates

Quentin Gascuel , Amandine A. Bordat , Erika Sallet , Nicolas Pouilly , Sebastien Carrere et al.
PLoS ONE, 2016, 11 (2), pp.1-19. ⟨10.1371/journal.pone.0148513⟩
Journal articles hal-02632845v1

EuGene-PP: a next generation automated annotation pipeline for prokaryotic genomes.

Erika Sallet , Jerome Gouzy , Thomas Schiex
Bioinformatics, 2014, 30 (18), pp.2659-2661. ⟨10.1093/bioinformatics/btu366⟩
Journal articles hal-02632297v1