Spatial normalization of array-CGH data.
Pierre Neuvial
,
Philippe Hupé
,
Isabel Brito
,
Stéphane Liva
,
Elodie Manié
et al.
Journal articles
inserm-00089910v1
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Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration
David P A Cohen
,
Loredana Martignetti
,
Sylvie Robine
,
Emmanuel Barillot
,
Andrei Zinovyev
et al.
Journal articles
inserm-02141625v1
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VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles
Philippe La Rosa
,
Eric Viara
,
Philippe Hupé
,
Gaëlle Pierron
,
Stéphane Liva
et al.
Journal articles
hal-01199867v1
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ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis
Adil El Filali
,
Séverine Lair
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Catia Verbeke
,
Philippe La Rosa
,
François Radvanyi
et al.
Journal articles
hal-03225608v1
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CAPweb: a bioinformatics CGH array Analysis Platform
Stéphane Liva
,
Philippe Hupé
,
Pierre Neuvial
,
Isabel Brito
,
Eric Viara
et al.
Journal articles
hal-01199870v1
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A comprehensive approach to the molecular determinants of lifespan using a Boolean model of geroconversion
Loic Verlingue
,
Aurélien Dugourd
,
Gautier Stoll
,
Emmanuel Barillot
,
Laurence Calzone
et al.
Journal articles
hal-01366791v1
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Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks
Sylvain Blachon
,
Gautier Stoll
,
Carito Guziolowski
,
Andrei Zinovyev
,
Emmanuel Barillot
et al.
AIAI 2009 Workshop -- Workshop on Biomedical Informatics and Intelligent Approaches in the Support of Genomic Medicine (BMIINT) , Apr 2009, Thessalonik, Greece. pp.72-87
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inria-00429801v1
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SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read map-pability.
Daria Iakovishina
,
Isabelle Janoueix-Lerosey
,
Emmanuel Barillot
,
Mireille Regnier
,
Valentina Boeva
et al.
Journal articles
hal-01253126v1
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Mathematical modelling of cell-fate decision in response to death receptor engagement.
Laurence Calzone
,
Laurent Tournier
,
Simon Fourquet
,
Denis Thieffry
,
Boris Zhivotovsky
et al.
Journal articles
inserm-00704979v1
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LICORN: learning cooperative regulation networks from gene expression data.
Mohamed Elati
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Pierre Neuvial
,
Monique Bolotin-Fukuhara
,
Emmanuel Barillot
,
François Radvanyi
et al.
Journal articles
hal-00192537v1
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Highly dynamic and sex-specific expression of microRNAs during early ES cell differentiation.
Constance Ciaudo
,
Nicolas Servant
,
Valérie Cognat
,
Alexis Sarazin
,
Emmanuelle Kieffer
et al.
Journal articles
inserm-00438642v1
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Dynamical Boolean Modeling of Immunogenic Cell Death
Andrea Checcoli
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Jonathan Pol
,
Aurelien Naldi
,
Vincent Noël
,
Emmanuel Barillot
et al.
Journal articles
hal-03050475v1
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WebMaBoSS: A Web Interface for Simulating Boolean Models Stochastically
Vincent Noël
,
Marco Ruscone
,
Gautier Stoll
,
Eric Viara
,
Andrei Zinovyev
et al.
Journal articles
hal-03479335v1
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A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression
Jing Liu
,
Daniela Ottaviani
,
Meriem Sefta
,
Céline Desbrousses
,
Elodie Chapeaublanc
et al.
Journal articles
hal-03374490v1
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Spectral analysis of gene expression profiles using gene networks
Franck Rapaport
,
Andrei Zinovyev
,
Marie Dutreix
,
Emmanuel Barillot
,
Jean-Philippe Vert
et al.
2006
Preprints, Working Papers, ...
hal-00021785v1
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Classification of microarray data using gene networks.
Franck Rapaport
,
Andrei Zinovyev
,
Marie Dutreix
,
Emmanuel Barillot
,
Jean-Philippe Vert
et al.
Journal articles
hal-00433577v1
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Stability-based comparison of class discovery methods for DNA copy number profiles.
Isabel Brito
,
Philippe Hupé
,
Pierre Neuvial
,
Emmanuel Barillot
PLoS ONE , 2012, 8 (12), pp.e81458
Journal articles
hal-01201580v1
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Classification of gene signatures for their information value and functional redundancy
Laura Cantini
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Laurence Calzone
,
Loredana Martignetti
,
Mattias Rydenfelt
,
Nils Blüthgen
et al.
Journal articles
hal-02129604v1
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Contribution of epigenetic landscapes and transcription factors to X-chromosome reactivation in the inner cell mass
Maud Borensztein
,
Ikuhiro Okamoto
,
Laurène Syx
,
Guillaume Guilbaud
,
Christel Picard
et al.
Journal articles
hal-03437406v1
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Xist-dependent imprinted X inactivation and the early developmental consequences of its failure
Maud Borensztein
,
Laurène Syx
,
Katia Ancelin
,
Patricia Diabangouaya
,
Christel Picard
et al.
Journal articles
hal-03021809v1
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Demarcation of Topologically Associating Domains Is Uncoupled from Enriched CTCF Binding in Developing Zebrafish
Yuvia A Perèz Rico
,
Emmanuel Barillot
,
Alena Shkumatava
Journal articles
hal-02872297v1
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Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Valentina Boeva
,
Caroline Louis-Brennetot
,
Agathe Peltier
,
Simon Durand
,
Cecile Pierre-Eugene
et al.
Journal articles
hal-01741718v1
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Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer
Laura Cantini
,
Gloria Bertoli
,
Claudia Cava
,
Thierry Dubois
,
Andrei Zinovyev
et al.
Journal articles
hal-02129600v1
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Aberrant ERBB4-SRC Signaling as a Hallmark of Group 4 Medulloblastoma Revealed by Integrative Phosphoproteomic Profiling
Antoine Forget
,
Loredana Martignetti
,
Stéphanie Puget
,
Laurence Calzone
,
Sebastian Brabetz
et al.
Journal articles
hal-02347170v1
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Live-Cell Chromosome Dynamics and Outcome of X Chromosome Pairing Events during ES Cell Differentiation
Osamu Masui
,
Isabelle Bonnet
,
Patricia Le Baccon
,
Isabel Brito
,
Tim Pollex
et al.
Journal articles
hal-02454276v1
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Effective normalization for copy number variation in Hi-C data
Nicolas Servant
,
Nelle Varoquaux
,
Edith Heard
,
Emmanuel Barillot
,
Jean-Philippe Vert
et al.
Journal articles
inserm-02059124v1
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Sequence Profiling of the Saccharomyces cerevisiae Genome Permits Deconvolution of Unique and Multialigned Reads for Variant Detection
Claire Jubin
,
Alexandre Serero
,
Sophie Loeillet
,
Emmanuel Barillot
,
Alain Nicolas
et al.
Journal articles
hal-01324830v1
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Interpreting pathways to discover cancer driver genes with Moonlight
Antonio Colaprico
,
Catharina Olsen
,
Matthew Bailey
,
Gabriel Odom
,
Thilde Terkelsen
et al.
Journal articles
hal-03001026v1
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Search for a gene expression signature of breast cancer local recurrence in young women.
Nicolas Servant
,
Marc Bollet
,
Hans Halfwerk
,
Kevin Bleakley
,
Bas Kreike
et al.
Journal articles
hal-00756723v1
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Analysis of Somatic Alterations in Cancer Genome: From SNP Arrays to Next Generation Sequencing
Tatiana Popova
,
Valentina Boeva
,
Elodie Manié
,
Yves Rozenholc
,
Emmanuel Barillot
et al.
Genomics I Humans, Animals and Plants , 2013
Book sections
hal-01108425v1
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