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ParTIES: a toolbox for Paramecium interspersed DNA elimination studies
Cyril Denby Wilkes
,
Olivier Arnaiz
,
Linda Sperling
Journal articles
hal-01412717v1
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ParameciumDB 2019: integrating genomic data across the genus for functional and evolutionary biology
Olivier Arnaiz
,
Eric Meyer
,
Linda Sperling
Journal articles
hal-02379386v1
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Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.
L. Duret
,
Jean Cohen
,
Claire Jubin
,
Philippe Dessen
,
Jean-François Goût
et al.
Journal articles
hal-00282468v1
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Genome-defence small RNAs exapted for epigenetic mating-type inheritance.
Deepankar Pratap Singh
,
Baptiste Saudemont
,
Gérard Guglielmi
,
Olivier Arnaiz
,
Jean-François Goût
et al.
Journal articles
hal-01015302v1
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Evolutionary plasticity of mating-type determination mechanisms in Paramecium aurelia sibling species
Natalia Sawka-Gądek
,
Alexey Potekhin
,
Deepankar Pratap Singh
,
Inessa Grevtseva
,
Olivier Arnaiz
et al.
Journal articles
hal-03102341v1
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A meiosis-specific Spt5 homolog involved in non-coding transcription
Julita Gruchota
,
Cyril Denby Wilkes
,
Olivier Arnaiz
,
Linda Sperling
,
Jacek K. Nowak
et al.
Journal articles
hal-02195050v1
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ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data.
Olivier Arnaiz
,
Scott Cain
,
Jean Cohen
,
Linda Sperling
Journal articles
hal-00130942v1
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Functional diversification of Paramecium Ku80 paralogs safeguards genome integrity during precise programmed DNA elimination
Arthur Abello
,
Vinciane Régnier
,
Olivier Arnaiz
,
Romain Le Bars
,
Mireille Bétermier
et al.
Journal articles
hal-02547876v1
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The Paramecium histone chaperone Spt16-1 is required for Pgm endonuclease function in programmed genome rearrangements
Augustin de Vanssay
,
Amandine Touzeau
,
Olivier Arnaiz
,
Andrea Frapporti
,
Jamie Phipps
et al.
Journal articles
hal-02990752v1
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Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes
Diamantis Sellis
,
Frédéric Guérin
,
Olivier Arnaiz
,
Walker Pett
,
Emmanuelle Lerat
et al.
Journal articles
hal-03366429v1
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Annotation des génomes de paramécies
Olivier Arnaiz
Bio-Informatique, Biologie Systémique [q-bio.QM]. Université Paris-Saclay, 2020. Français. ⟨NNT : 2020UPASL046⟩
Theses
tel-03175069v1
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Global trends of whole genome duplications revealed by the genome sequence of the ciliate Paramecium tetraurelia
Jean-Marc Aury
,
Olivier Jaillon
,
* Laurent Duret
,
Benjamin Noel
,
Claire Jubin
et al.
Journal articles
hal-00090904v1
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The Ciliary Protein IFT57 in the Macronucleus of Paramecium
Lei Shi
,
France Koll
,
Olivier Arnaiz
,
Jean Cohen
Journal articles
hal-02183683v1
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MKS-NPHP module proteins control ciliary shedding at the transition zone
Delphine Gogendeau
,
Michel Lemullois
,
Pierrick Le Borgne
,
Manon Castelli
,
Anne Aubusson-Fleury
et al.
Journal articles
hal-02509016v1
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Universal trends of post-duplication evolution revealed by the genomes of 13 Paramecium species sharing an ancestral whole-genome duplication
Jean-Francois Gout
,
Parul Johri
,
Olivier Arnaiz
,
Thomas Doak
,
Simran Bhullar
et al.
2021
Preprints, Working Papers, ...
hal-02990778v1
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The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences.
Olivier Arnaiz
,
Nathalie Mathy
,
Céline Baudry
,
Sophie Malinsky
,
Jean-Marc Aury
et al.
Journal articles
hal-00759182v1
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The BioMart community portal: an innovative alternative to large, centralized data repositories
Damian Smedley
,
Syed Haider
,
Steffen Durinck
,
Luca Pandini
,
Paolo Provero
et al.
Journal articles
hal-01146849v1
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GC content but not nucleosome positioning directly contributes to intron-splicing efficiency in Paramecium
Stefano Gnan
,
Mélody Matelot
,
Marion Weiman
,
Olivier Arnaiz
,
Frédéric Guérin
et al.
Journal articles
hal-03400776v1
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Six domesticated PiggyBac transposases together carry out programmed DNA elimination in Paramecium
Julien Bischerour
,
Simran Bhullar
,
Cyril Denby Wilkes
,
Vinciane Régnier
,
Nathalie Mathy
et al.
Journal articles
hal-02176490v1
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Loss of a Fragile Chromosome Region leads to the Screwy Phenotype in Paramecium tetraurelia
Irina Nekrasova
,
Vera Nikitashina
,
Simran Bhullar
,
Olivier Arnaiz
,
Deepankar P. Singh
et al.
Journal articles
hal-02183793v1
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A mating-type mutagenesis screen identifies a zinc-finger protein required for specific DNA excision events in Paramecium
Simran Bhullar
,
Cyril Denby Wilkes
,
Olivier Arnaiz
,
Mariusz Nowacki
,
Linda Sperling
et al.
Journal articles
hal-02176489v1
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TFIIS-Dependent Non-coding Transcription Regulates Developmental Genome Rearrangements.
Kamila Maliszewska-Olejniczak
,
Julita Gruchota
,
Robert Gromadka
,
Cyril Denby Wilkes
,
Olivier Arnaiz
et al.
Journal articles
hal-01234177v1
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Flow cytometry sorting of nuclei enables the first global characterization of Paramecium germline DNA and transposable elements
Frédéric Guérin
,
Olivier Arnaiz
,
Nicole Boggetto
,
Cyril Denby Wilkes
,
Eric Meyer
et al.
Journal articles
hal-02146952v1
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The Polycomb protein Ezl1 mediates H3K9 and H3K27 methylation to repress transposable elements in Paramecium
Andrea Frapporti
,
Caridad Miró Pina
,
Olivier Arnaiz
,
Daniel Holoch
,
Takayuki Kawaguchi
et al.
Journal articles
hal-02164121v1
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Paramecium Polycomb Repressive Complex 2 physically interacts with the small RNA binding PIWI protein to repress transposable elements
Caridad Miró Pina
,
Olivia Charmant
,
Takayuki Kawaguchi
,
Daniel Holoch
,
Audrey Michaud
et al.
Journal articles
hal-03358389v1
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Developmental timing of programmed DNA elimination in $Paramecium\ tetraurelia$ recapitulates germline transposon evolutionary dynamics
Coralie Zangarelli
,
Olivier Arnaiz
,
Mickaël Bourge
,
Kevin Gorrichon
,
Yan Jaszczyszyn
et al.
Journal articles
hal-03840719v2
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The Polycomb protein Ezl1 mediates H3K9 and H3K27 methylation to repress transposable elements in Paramecium
Andrea Frapporti
,
Caridad Miró Pina
,
Olivier Arnaiz
,
Daniel Holoch
,
Takayuki Kawaguchi
et al.
Journal articles
hal-03985655v1
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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.
Jean-Marc Aury
,
Olivier Jaillon
,
L. Duret
,
Benjamin Noel
,
Claire Jubin
et al.
Journal articles
hal-00132091v1
|
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Improved methods and resources for paramecium genomics: transcription units, gene annotation and gene expression
Olivier Arnaiz
,
Erwin van Dijk
,
Mireille Bétermier
,
Maoussi Lhuillier-Akakpo
,
Augustin de Vanssay
et al.
Journal articles
hal-01602694v1
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