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UVB Induces a Genome-Wide Acting Negative Regulatory Mechanism That Operates at the Level of Transcription Initiation in Human Cells

Ákos Gyenis , David Umlauf , Zsuzsanna Újfaludi , Imre Boros , Tao Ye et al.
PLoS Genetics, 2014, 10 (7), pp.e1004483. ⟨10.1371/journal.pgen.1004483⟩
Journal articles hal-03457227v1
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TBPL2/TFIIA complex overhauls oocyte transcriptome during oocyte growth

Changwei Yu , Nevena Cvetesic , Kapil Gupta , Tao Ye , Emese Gazdag et al.
Preprints, Working Papers, ... hal-02990931v1
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Sumoylation at chromatin governs coordinated repression of a transcriptional program essential for cell growth and proliferation

Hélène Neyret-Kahn , Moussa Benhamed , Tao Ye , Stéphanie Le Gras , Jack-Christophe Cossec et al.
Genome Research, 2013, 23 (10), pp.1563-1579. ⟨10.1101/gr.154872.113⟩
Journal articles pasteur-03235077v1

Senescence is an endogenous trigger for microRNA-directed transcriptional gene silencing in human cells

Moussa Benhamed , Utz Herbig , Tao Ye , Anne Dejean , Oliver Bischof et al.
Nature Cell Biology, 2012, 14 (3), pp.266-275. ⟨10.1038/ncb2443⟩
Journal articles pasteur-03236097v1
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Nutrigenomic analyses reveal miRNAs and mRNAs affected by feed restriction in the mammary gland of midlactation dairy cows

Pierre-Alexis Billa , Yannick Faulconnier , Tao Ye , Céline Bourdon , José Pires et al.
PLoS ONE, 2021, 16 (4), ⟨10.1371/journal.pone.0248680⟩
Journal articles hal-03200342v1
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Genetic analysis of the biosynthesis of 2-methoxy-3-isobutylpyrazine, a major grape-derived aroma compound impacting wine quality

Sabine S. Guillaumie , Andrea Ilg , Stéphane Réty , Maxime Brette , Claudine Trossat-Magnin et al.
Plant Physiology, 2013, 162 (2), pp.604-615. ⟨10.1104/pp.113.218313⟩
Journal articles hal-02647779v1
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Histone H2Bub1 deubiquitylation is essential for mouse development, but does not regulate global RNA polymerase II transcription

Fang Wang , Farrah El-Saafin , Tao Ye , Matthieu Stierle , Luc Negroni et al.
Cell Death and Differentiation, 2021, 28 (8), pp.2385-2403. ⟨10.1038/s41418-021-00759-2⟩
Journal articles inserm-03294428v1

Epigenomic mapping identifies a super-enhancer repertoire that regulates cell identity in bladder cancers through distinct transcription factor networks

Hélène Neyret-Kahn , Jacqueline Fontugne , Xiang Yu Meng , Clarice Groeneveld , Luc Cabel et al.
Preprints, Working Papers, ... hal-03854062v1

Tip60 complex binds to active Pol II promoters and a subset of enhancers and co-regulates the c-Myc network in mouse embryonic stem cells

Sarina Ravens , Changwei Yu , Tao Ye , Matthieu Stierle , Laszlo Tora et al.
Epigenetics & Chromatin, 2015, 8 (1), ⟨10.1186/s13072-015-0039-z⟩
Journal articles hal-03457212v1

Mof-associated complexes have overlapping and unique roles in regulating pluripotency in embryonic stem cells and during differentiation

Sarina Ravens , Marjorie Fournier , Tao Ye , Matthieu Stierle , Doulaye Dembele et al.
Journal articles hal-03463052v1

Cockayne’s Syndrome A and B Proteins Regulate Transcription Arrest after Genotoxic Stress by Promoting ATF3 Degradation

Alexey Epanchintsev , Federico Costanzo , Marc-Alexander Rauschendorf , Manuela Caputo , Tao Ye et al.
Molecular Cell, 2017, 68 (6), pp.1054-1066.e6. ⟨10.1016/j.molcel.2017.11.009⟩
Journal articles hal-03542251v1

seqMINER: an integrated ChIP-seq data interpretation platform

Tao Ye , Arnaud Krebs , Mohamed-Amin Choukrallah , Celine Keime , Frederic Plewniak et al.
Nucleic Acids Research, 2011, 39 (6), pp.e35-e35. ⟨10.1093/nar/gkq1287⟩
Journal articles hal-03465191v1
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An Integrated Analysis of miRNA and Gene Expression Changes in Response to an Obesogenic Diet to Explore the Impact of Transgenerational Supplementation with Omega 3 Fatty Acids

Karla Fabiola Corral-Jara , Laura Cantini , Nathalie Poupin , Tao Ye , Jean-Paul Rigaudière et al.
Nutrients, 2020, 12 (12), pp.3864. ⟨10.3390/nu12123864⟩
Journal articles hal-03100700v1
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CD4 + T cells require Ikaros to inhibit their differentiation towards a pathogenic cell fate

Chiara Bernardi , Gaëtan Maurer , Tao Ye , Patricia Marchal , Bernard Jost et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (17), pp.e2023172118. ⟨10.1073/pnas.2023172118⟩
Journal articles hal-03362243v1

KAT2A/KAT2B-targeted acetylome reveals a role for PLK4 acetylation in preventing centrosome amplification

Marjorie Fournier , Meritxell Orpinell , Cédric Grauffel , Elisabeth Scheer , Jean-Marie Garnier et al.
Nature Communications, 2016, 7 (1), ⟨10.1038/ncomms13227⟩
Journal articles hal-03457178v1
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TBPL2/TFIIA complex establishes the maternal transcriptome through oocyte-specific promoter usage

Changwei Yu , Nevena Cvetesic , Vincent Hisler , Kapil Gupta , Tao Ye et al.
Nature Communications, 2020, 11 (1), pp.6439. ⟨10.1038/s41467-020-20239-4⟩
Journal articles inserm-03294422v1

Feed restriction modifies mammary miRNome of mid-lactation cows

Pierre-Alexis Billa , José Pires , Yannick Faulconnier , Tao Ye
10. International Symposium on the Nutrition of Herbivores (ISNH10), Sep 2018, Clermont-Ferrand, France
Conference papers hal-02737075v1

The ribose methylation enzyme FTSJ1 has a conserved role in neuron morphology and learning performance

Mira Brazane , Dilyana Dimitrova , Julien Pigeon , Chiara Paolantoni , Tao Ye et al.
Life Science Alliance, 2023, 6 (4), pp.e202201877. ⟨10.26508/lsa.202201877⟩
Journal articles hal-03967369v1
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The related coactivator complexes SAGA and ATAC control embryonic stem cell self-renewal through acetyltransferase-independent mechanisms

Veronique Fischer , Damien Plassard , Tao Ye , Bernardo Reina-San-Martin , Matthieu Stierle et al.
Cell Reports, 2021, 36, pp.109598. ⟨10.1016/j.celrep.2021.109598⟩
Journal articles hal-03331013v1

Retinoic acid receptors recognise the mouse genome through binding elements with diverse spacing and topology.

Emmanuel Moutier , Tao Ye , Mohamed-Amin Choukrallah , Sylvia Urban , Judit Osz et al.
Journal of Biological Chemistry, 2012, epub ahead of print. ⟨10.1074/jbc.M112.361790⟩
Journal articles hal-00720090v1

Concurrent CDX2 cis -deregulation and UBTF::ATXN7L3 fusion define a novel high-risk subtype of B-cell ALL

Marie Passet , Rathana Kim , Stéphanie Gachet , François Sigaux , Julie Chaumeil et al.
Blood, 2022, 139 (24), pp.3505-3518. ⟨10.1182/blood.2021014723⟩
Journal articles hal-03851902v1

Interpreting and Visualizing ChIP-seq Data with the seqMINER Software

Tao Ye , Sarina Ravens , Arnaud Krebs , Làszlò Tora
Stem Cell Transcriptional Networks, 1150, Springer New York, pp.141-152, 2014, Methods in Molecular Biology, ⟨10.1007/978-1-4939-0512-6_8⟩
Book sections hal-03457241v1

Widespread Negative Response Elements Mediate Direct Repression by Agonist- Liganded Glucocorticoid Receptor

Milan Surjit , Krishna priya Ganti , Atish Mukherji , Tao Ye , Guoqiang Hua et al.
Cell, 2011, 145 (2), pp.224-241. ⟨10.1016/j.cell.2011.03.027⟩
Journal articles hal-03309013v1

Waves of sumoylation support transcription dynamics during adipocyte differentiation

Xu Zhao , Ivo A Hendriks , Stéphanie Le Gras , Tao Ye , Lucía Ramos-Alonso et al.
Nucleic Acids Research, 2022, 50 (3), pp.1351-1369. ⟨10.1093/nar/gkac027⟩
Journal articles hal-03716138v1

First total synthesis and stereochemical revision of laxaphycin B and its extension to lyngbyacyclamide A.

France Boyaud , Zahia Mahiout , Christine Lenoir , Shoubin Tang , Joanna Wdzieczak-Bakala et al.
Organic Letters, 2013, 15 (15), pp.3898-901. ⟨10.1021/ol401645m⟩
Journal articles hal-00910980v1

Disrupting the IL-36 and IL-23/IL-17 loop underlies the efficacy of calcipotriol and corticosteroid therapy for psoriasis

Beatriz Germán , Ruicheng Wei , Pierre Hener , Christina Martins , Tao Ye et al.
JCI Insight, 2019, 4 (2), ⟨10.1172/jci.insight.123390⟩
Journal articles hal-02387518v1
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Extensive NEUROG3 occupancy in the human pancreatic endocrine gene regulatory network

Valérie Schreiber , Reuben Mercier , Sara Jiménez , Tao Ye , Emmanuel García-Sánchez et al.
Molecular metabolism, 2021, 53, pp.101313. ⟨10.1016/j.molmet.2021.101313⟩
Journal articles hal-03454968v1