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A Tribute to Disorder in the Genome of the Bloom- Forming Freshwater Cyanobacterium Microcystis aeruginosa

Jean-François Humbert , Valérie Barbe , Amel Latifi , Muriel Gugger , Alexandra Calteau et al.
PLoS ONE, 2013, 8 (8), pp.e70747. ⟨10.1371/journal.pone.0070747⟩
Journal articles bioemco-00851371v1
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Complete genome sequence of Crohn's disease-associated adherent-invasive E. coli strain LF82.

Sylvie Miquel , Eric Peyretaillade , Laurent Claret , Amélie de Vallée , Carole Dossat et al.
PLoS ONE, 2010, 5 (9), epub ahead of print. ⟨10.1371/journal.pone.0012714⟩
Journal articles hal-00529639v1

Evolutionary history and genetic parallelism affect correlated responses to evolution.

Mickael Le Gac , Tim F Cooper , Stéphane Cruveiller , Claudine Médigue , Dominique Schneider et al.
Molecular Ecology, 2013, 22 (12), pp.3292-3303
Journal articles hal-00961479v1

Legumes Symbioses: Absence of Nod Genes in Photosynthetic Bradyrhizobia

Eric Giraud , Lionel Moulin , David Vallenet , Valérie Barbe , Eddie Cytryn et al.
Science, 2007, 316, pp.1307 - 1312. ⟨10.1126/science.1139548⟩
Journal articles halsde-00151340v1

Revealing the hidden functional diversity of an enzyme family

Karine Bastard , Adam Alexander Thil Smith , Carine Vergne-Vaxelaire , Alain Perret , Anne Zaparucha et al.
Nature Chemical Biology, 2014, 10 (1), pp.42-49. ⟨10.1038/nchembio.1387⟩
Journal articles hal-02504067v1
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Comparative genomics between two Xenorhabdus bovienii strains highlights differential evolutionary scenarios within an entomopathogenic bacterial species

Gaelle Bisch , Jean-Claude Ogier , Claudine Médigue , Zoé Rouy , Stéphanie Vincent et al.
Genome Biology and Evolution, 2016, 8 (1), pp.148-160. ⟨10.1093/gbe/evv248⟩
Journal articles hal-01837293v1

Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems

Philippe N. Bertin , Claudine Médigue , Philippe Normand
Microbiology, 2008, 154, pp.347-359. ⟨10.1099/011791-0⟩
Journal articles halsde-00254466v1

Complete genome sequences of six strains of the genus Methylobacterium.

Christopher J Marx , Françoise Bringel , Ludmila Chistoserdova , Lionel Moulin , Muhammad Farhan Ul Haque et al.
Journal of Bacteriology, 2012, 194 (17), pp.4746-8. ⟨10.1128/JB.01009-12⟩
Journal articles hal-00749347v1
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Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease

Laura Gomez-Valero , Christophe Rusniok , Monica Rolando , Mario Neou , Delphine Dervins-Ravault et al.
Genome Biology, 2014, 15 (11), pp.505. ⟨10.1186/s13059-014-0505-0⟩
Journal articles hal-01329875v1

Integration of data and methods for genome analysis.

Patrick Durand , Claudine Médigue , Anne Morgat , Yves Vandenbrouck , Alain Viari et al.
Current Opinion in Drug Discovery and Development, 2003, 6 (3), pp.346-52
Journal articles hal-02072584v1

Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila.

Nicolas Vodovar , David Vallenet , Stéphane Cruveiller , Zoé Rouy , Valérie Barbe et al.
Nat Biotechnol, 2006, 24 (6), pp.673-9. ⟨10.1038/nbt1212⟩
Journal articles hal-00133119v1

Bacillus subtilis, the model Gram-positive bacterium: 20years of annotation refinement

Rainer Borriss , Antoine Danchin , Colin R. Harwood , Claudine Médigue , Eduardo P. C. Rocha et al.
Microbial Biotechnology, 2018, 11 (1), pp.3-17. ⟨10.1111/1751-7915.13043⟩
Journal articles cea-02291345v1

Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1.

Stéphane Vuilleumier , Thierry Nadalig , Muhammad Farhan Ul Haque , Ghislaine Magdelenat , Aurélie Lajus et al.
Journal of Bacteriology, 2011, 193 (18), pp.5035-6. ⟨10.1128/JB.05627-11⟩
Journal articles hal-00644071v1

Genome sequence of Methyloversatilis universalis FAM5T, a methylotrophic representative of the order Rhodocyclales.

Weerayuth Kittichotirat , Nathan M Good , Rob Hall , Françoise Bringel , Aurélie Lajus et al.
Journal of Bacteriology, 2011, 193 (17), pp.4541-2. ⟨10.1128/JB.05331-11⟩
Journal articles hal-00644081v1

Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load.

Sébastien Wielgoss , Jeffrey E Barrick , Olivier Tenaillon , Michael J Wiser , W James Dittmar et al.
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (1), pp.222-7. ⟨10.1073/pnas.1219574110⟩
Journal articles hal-00800700v1

The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.

Boyang Ji , Sheng-Da Zhang , Wei-Jia Zhang , Zoe Rouy , François Alberto et al.
Environmental Microbiology, 2016, pp.doi: 10.1111/1462-2920.13637. ⟨10.1111/1462-2920.13637⟩
Journal articles hal-01410134v1
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Specialization of small non-conjugative plasmids in Escherichia coli according to their family types

Catherine Branger , Alice Ledda , Typhaine Billard-Pomares , Benoît Doublet , Valérie Barbe et al.
Microbial Genomics, 2019, 5 (9), 13p. ⟨10.1099/mgen.0.000281⟩
Journal articles hal-02403160v1
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Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii

Jean-Claude Ogier , Sylvie Pages , Gaelle Bisch , Helene Chiapello , Claudine Médigue et al.
Genome Biology and Evolution, 2014, 6, pp.1495-1513. ⟨10.1093/gbe/evu119⟩
Journal articles hal-01837258v1
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TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages

Daria Bottai , Wafa Frigui , Fadel Sayes , Mariagrazia Di Luca , Dalila Spadoni et al.
Nature Communications, 2020, 11 (1), pp.684. ⟨10.1038/s41467-020-14508-5⟩
Journal articles pasteur-02473990v1

A complete collection of single‐gene deletion mutants of Acinetobacter baylyi ADP1

Véronique de Berardinis , David Vallenet , Vanina Castelli , Marielle Besnard , Agnès Pinet et al.
Molecular Systems Biology, 2008, 4 (1), pp.174. ⟨10.1038/msb.2008.10⟩
Journal articles hal-02503013v1
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Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis

Karine Bastard , Alain Perret , Aline Mariage , Thomas Bessonnet , Agnès Pinetturpault et al.
Nature Chemical Biology, 2017, 13, pp.858-866. ⟨10.1038/nchembio.2397⟩
Journal articles cea-02132779v1
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Livre Blanc sur les Données au CNRS État des Lieux et Pratiques Mission Calcul et données (MiCaDo)

Denis Veynante , Michel Bidoit , Michel Daydé , Pierre-Etienne Macchi , Denis Girou et al.
Other publications hal-02044528v1

Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).

Lisa y Stein , Françoise Bringel , Alan A Dispirito , Sukkyun Han , Mike S M Jetten et al.
Journal of Bacteriology, 2011, 193 (10), pp.2668-9. ⟨10.1128/JB.00278-11⟩
Journal articles hal-00644085v1

Genome sequence of the obligate gammaproteobacterial methanotroph Methylomicrobium album strain BG8.

K Dimitri Kits , Marina G Kalyuzhnaya , Martin G Klotz , Mike S M Jetten , Huub J M Op den Camp et al.
Genome Announc, 2013, 1 (2), pp.e0017013. ⟨10.1128/genomeA.00170-13⟩
Journal articles hal-00880898v1
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A tale of two oxidation states: bacterial colonization of arsenic-rich environments.

Daniel Muller , Claudine Médigue , Sandrine Koechler , Valérie Barbe , ​mohamed Barakat et al.
PLoS Genetics, 2007, 3 (4), pp.e53. ⟨10.1371/journal.pgen.0030053⟩
Journal articles hal-00340034v1

The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes.

Adam Alexander Thil Smith , Eugeni Belda , Alain Viari , Claudine Médigue , David Vallenet et al.
PLoS Computational Biology, 2012, 8 (5), ⟨10.1371/journal.pcbi.1002540⟩
Journal articles hal-00763496v1

Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli.

Sébastien Wielgoss , Jeffrey E Barrick , Olivier Tenaillon , Stéphane Cruveiller , Béatrice Chane-Woon-Ming et al.
G3, 2011, 1 (3), pp.183-186. ⟨10.1534/g3.111.000406⟩
Journal articles hal-00800695v1
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Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

Jérémy Andres , Florence Arsène-Ploetze , Valérie Barbe , Céline Brochier-Armanet , Jessica Cleiss-Arnold et al.
Genome Biol Evol, 2013, 5 (5), pp.934-53. ⟨10.1093/gbe/evt061⟩
Journal articles hal-00972245v1
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Structure, function, and evolution of the Thiomonas spp. genome.

Florence Arsène-Ploetze , Sandrine Koechler , Marie Marchal , Jean-Yves Coppée , Michael Chandler et al.
PLoS Genetics, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩
Journal articles hal-00463879v1

Genome sequence of the arctic methanotroph Methylobacter tundripaludum SV96.

Mette M Svenning , Anne Grethe Hestnes , Ingvild Wartiainen , Lisa y Stein , Martin G Klotz et al.
Journal of Bacteriology, 2011, 193 (22), pp.6418-9. ⟨10.1128/JB.05380-11⟩
Journal articles hal-00644077v1