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A Double Combinatorial Approach to Discovering Patterns in Biological Sequences
M.-F. Sagot
,
Alain Viari
incollection, 1996, 1075, pp.186-208
Journal articles
hal-00435048v1
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Characterization of Depressive Symptoms Trajectories After Breast Cancer Diagnosis in Women in France
Cécile Charles
,
Aurélie Bardet
,
Alicia Larive
,
Philip Gorwood
,
Nicolas Ramoz
et al.
Journal articles
inserm-03650391v1
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Spatial modelling of plant diversity from high-throughput environmental dna sequence data
Angelika Studeny
,
Florence Forbes
,
Eric Coissac
,
Alain Viari
,
Celine Mercier
et al.
45èmes Journées de Statistique, Société Française de Statistique, May 2013, Toulouse, France
Conference papers
hal-00933699v1
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Somatic mutations reveal asymmetric cellular dynamics in the early human embryo
Young Seok Ju
,
Inigo Martincorena
,
Moritz Gerstung
,
Mia Petljak
,
Ludmil B. Alexandrov
et al.
Journal articles
hal-01525712v1
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Ribosomal RNA 2′O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer
Virginie Marcel
,
Janice Kielbassa
,
Virginie Marchand
,
Kundhavai s Natchiar
,
Hermes Paraqindes
et al.
Journal articles
inserm-03103238v1
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The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis
Isabelle Chambaud
,
Roland Heilig
,
Stephane Ferris
,
Valérie Barbe
,
Delphine Samson
et al.
Journal articles
hal-02679458v1
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Integration of data and methods for genome analysis.
Patrick Durand
,
Claudine Médigue
,
Anne Morgat
,
Yves Vandenbrouck
,
Alain Viari
et al.
Current Opinion in Drug Discovery and Development, 2003, 6 (3), pp.346-52
Journal articles
hal-02072584v1
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Integrated analysis highlights APC11 protein expression as a likely new independent predictive marker for colorectal cancer
Youenn Drouet
,
Isabelle Treilleux
,
Alain Viari
,
Sophie Léon
,
Mojgan Devouassoux-Shisheboran
et al.
Journal articles
hal-01920572v1
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Comparative Genomics of Three Strains of Ehrlichia ruminantium: A Review.
R. Frutos
,
Alain Viari
,
C. Ferraz
,
Abdelkrim Bensaïd
,
Anne Morgat
et al.
Journal articles
istex
hal-00125031v1
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Genetic Analysis of Lung Cancer and the Germline Impact on Somatic Mutation Burden
Aurélie a G Gabriel
,
Joshua R Atkins
,
Ricardo C C Penha
,
Karl Smith-Byrne
,
Valerie Gaborieau
et al.
Journal articles
hal-03914530v1
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Searching for repeated words in a text allowing for mismatches and gaps
M-F. Sagot
,
V. Escalier
,
Alain Viari
,
H. Soldano
incollection, 1995, --, pp.87-100
Journal articles
hal-00698197v1
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A 13-gene expression-based radioresistance score highlights the heterogeneity in the response to radiation therapy across HPV-negative HNSCC molecular subtypes
Jean-Philippe Foy
,
Louis Bazire
,
Sandra Ortiz-Cuaran
,
Sophie Deneuve
,
Janice Kielbassa
et al.
Journal articles
hal-01589514v1
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CDYL2 Epigenetically Regulates MIR124 to Control NF-kB/STAT3-Dependent Breast Cancer Cell Plasticity
Maha Siouda
,
Audrey D Dujardin
,
Laetitia Barbollat-Boutrand
,
Marco Mendoza-Parra
,
Benjamin Gibert
et al.
Journal articles
hal-02956108v1
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BCL2 mutations do not confer adverse prognosis in follicular lymphoma patients treated with rituximab
Sarah Huet
,
Edith Szafer-Glusman
,
Bruno Tesson
,
Luc Xerri
,
Wayne J. Fairbrother
et al.
Journal articles
hal-01524901v1
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Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes
Laetitia Guillot
,
Ludovic Delage
,
Alain Viari
,
Yves Vandenbrouck
,
Emmanuelle Com
et al.
Journal articles
hal-01987197v1
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Repurposing rotavirus vaccines for intratumoral immunotherapy can overcome resistance to immune checkpoint blockade
Tala Shekarian
,
Eva Sivado
,
Anne-Catherine Jallas
,
Stephane Depil
,
Janice Kielbassa
et al.
Journal articles
hal-02347852v1
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Mutational Profile of Aggressive, Localised Prostate Cancer from African Caribbean Men Versus European Ancestry Men
Laurie Tonon
,
Gaëlle Fromont
,
Sandrine Boyault
,
Emilie Thomas
,
Anthony Ferrari
et al.
Journal articles
hal-01921597v1
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The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes.
Adam Alexander Thil Smith
,
Eugeni Belda
,
Alain Viari
,
Claudine Médigue
,
David Vallenet
et al.
Journal articles
hal-00763496v1
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Differential strain-specific diagnosis of the heartwater agent: Ehrlichia ruminantium
N. Vachiery
,
G. Maganga
,
T. Lefrancois
,
Y. Kandassamy
,
F. Stachurski
et al.
Journal articles
istex
hal-00287922v1
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A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression
Jing Liu
,
Daniela Ottaviani
,
Meriem Sefta
,
Céline Desbrousses
,
Elodie Chapeaublanc
et al.
Journal articles
hal-03374490v1
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Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity
R. Frutos
,
Alain Viari
,
C. Ferraz
,
Anne Morgat
,
S. Eychenie
et al.
Journal articles
hal-00113068v1
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[Big Data in biology].
Alain Viari
Journal articles
hal-00851569v1
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Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia
Veasna Duong
,
Cameron Simmons
,
Laurent Gavotte
,
Alain Viari
,
Sivuth Ong
et al.
Journal articles
pasteur-00805484v1
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GenoLink: a graph-based querying and browsing system for investigating the function of genes and proteins
Patrick Durand
,
Laurent Labarre
,
Alain Meil
,
Jean-Louis Divo1
,
Yves Vandenbrouck
et al.
Journal articles
hal-00784481v1
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Reconstruction of switching thresholds in piecewise-affine models of genetic regulatory networks
Samuel Drulhe
,
Giancarlo Ferrari-Trecate
,
Hidde de Jong
,
Alain Viari
Hybrid Systems: Computation and Control, HSCC 2006, Mar 2006, Santa Barbara, CA, USA, pp.184 - 199, ⟨10.1007/11730637⟩
Conference papers
inria-00001225v1
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Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes Mirror Repeats Pseudoknots and Triple Helices
M.-F. Sagot
,
Alain Viari
Conference papers
istex
hal-00435001v1
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The circular RNome of primary breast cancer
Marcel Smid
,
Saskia M Wilting
,
Katharina Uhr
,
F. Germán Rodríguez-González
,
Vanja de Weerd
et al.
Journal articles
hal-02338656v1
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A 13-gene expression-based radioresistance score highlights the heterogeneity in the response to radiation therapy across HPV-negative HNSCC molecular subtypes
Jean-Philippe Foy
,
Louis Bazire
,
Sandra Ortiz-Cuaran
,
Sophie Deneuve
,
Janice Kielbassa
et al.
Journal articles
hal-01599731v1
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Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration
Marcel Smid
,
F. Germán Rodríguez-González
,
Anieta M. Sieuwerts
,
Roberto Salgado
,
Wendy J. C. Prager-van Der Smissen
et al.
Journal articles
hal-01388445v1
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Actualités en recherche en oncologie : l'essentiel du 4e Symposium International 2019 du Centre de Recherche en Cancérologie de Lyon
Frédéric Catez
,
Nicole Dalla-Venezia
,
Jean-Jacques Diaz
,
Bertrand Dubois
,
Anthony Ferrari
et al.
Journal articles
hal-03004269v1
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