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authIdHal_s : celine-hernandez
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The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

Aurélien Naldi , Céline Hernandez , Nicolas Levy , Gautier Stoll , Pedro Monteiro et al.
Frontiers in Physiology, 2018, 9, pp.n°680:1-13. ⟨10.3389/fphys.2018.00680⟩
Journal articles hal-01794294v2
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Genetic Network Analyzer: A Tool for the Qualitative Simulation of Genetic Regulatory Networks

Hidde de Jong , Johannes Geiselmann , Céline Hernandez , Michel Page
[Research Report] RR-4262, INRIA. 2001
Reports inria-00072325v1

Qualitative simulation of the initiation of sporulation in Bacillus subtilis.

Hidde de Jong , Johannes Geiselmann , Grégory Batt , Céline Hernandez , Michel Page et al.
Bulletin of Mathematical Biology, 2004, 66 (2), pp.261-99. ⟨10.1016/j.bulm.2003.08.009⟩
Journal articles istex hal-00173847v1
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Benchmarking joint multi-omics dimensionality reduction approaches for cancer study

Laura Cantini , Pooya Zakeri , Céline Hernandez , Aurelien Naldi , Denis Thieffry et al.
2020
Preprints, Working Papers, ... hal-02998156v1
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Qualitative Simulation of the Initiation of Sporulation in B. subtilis

Hidde De jong , Johannes Geiselmann , Grégory Batt , Céline Hernandez , Michel Page et al.
[Research Report] RR-4527, INRIA. 2002
Reports inria-00072061v1
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Contribution of ROS and metabolic status to neonatal and adult CD8 + T cell activation

José Antonio Sánchez-Villanueva , Otoniel Rodríguez-Jorge , Oscar Ramirez-Pliego , Gabriela Rosas Salgado , Wassim Abou-Jaoudé et al.
PLoS ONE, 2019, 14 (12), pp.e0226388. ⟨10.1371/journal.pone.0226388⟩
Journal articles inserm-02428783v1
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Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

Nicolas Levy , Aurélien Naldi , Céline Hernandez , Gautier Stoll , Denis Thieffry et al.
Frontiers in Physiology, 2018, 9, pp.787. ⟨10.1101/319780⟩
Journal articles hal-01809081v1
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FAIR_bioinfo : a software perspective of reproducibility of bioinformatics analyses

Thomas Denecker , Céline Hernandez , Claire Toffano-Nioche
Journées Ouvertes de Biologie Informatique et Mathématiques - JOBIM 2020, Jun 2020, Montpellier, France
Conference poster hal-03071717v1
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Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer

Laura Cantini , Pooya Zakeri , Céline Hernandez , Aurelien Naldi , Denis Thieffry et al.
Nature Communications, 2021, 12, ⟨10.1038/s41467-020-20430-7⟩
Journal articles hal-03102088v1
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The Drosophila Fab-7 boundary element modulates Abd-B gene activity in the genital disc by guiding an inversion of collinear chromatin organization and alternative promoter use

Laura Moniot-Perron , Benoit Moindrot , Line Manceau , Joanne Edouard , Yan Jaszczyszyn et al.
2022
Preprints, Working Papers, ... hal-03818695v1
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RSAT 2015: Regulatory Sequence Analysis Tools

Alejandra Medina-Rivera , Matthieu Defrance , Olivier Sand , Carl Herrmann , Jaime A. Castro-Mondragon et al.
Nucleic Acids Research, 2015, 43 (W1), pp.W50--W56. ⟨10.1093/nar/gkv362⟩
Journal articles hal-01624369v1

Quantitative proteomics identifies the membrane-associated peroxidase GPx8 as a cellular substrate of the hepatitis C virus NS3-4A protease.

Kenichi Morikawa , Jérôme Gouttenoire , Céline Hernandez , Viet Loan Dao Thi , Huong T L Tran et al.
Hepatology, 2014, 59 (2), pp.423-33. ⟨10.1002/hep.26671⟩
Journal articles hal-00972312v1
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Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4 + T cell activation

Otoniel Rodríguez-Jorge , Linda Kempis-Calanis , Wassim Abou-Jaoudé , Darely Gutiérrez-Reyna , Céline Hernandez et al.
Science Signaling, 2019, 12 (577), pp.eaar3641. ⟨10.1126/scisignal.aar3641⟩
Journal articles hal-02154906v1
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Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements

Elodie Thierion , Johan Le Men , Samuel Collombet , Céline Hernandez , Fanny Coulpier et al.
PLoS Genetics, 2017, 13 (7), pp.e1006903. ⟨10.1371/journal.pgen.1006903⟩
Journal articles inserm-02158641v1

Qualitative simulation of genetic regulatory networks using piecewise-linear models.

Hidde de Jong , Jean-Luc Gouzé , Céline Hernandez , Michel Page , Tewfik Sari et al.
Bulletin of Mathematical Biology, 2004, 66 (2), pp.301-40. ⟨10.1016/j.bulm.2003.08.010⟩
Journal articles hal-00173849v1
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Qualitative Simulation of Genetic Regulatory Networks Using Piecewise-Linear Models

Hidde De Jong , Jean-Luc Gouzé , Céline Hernandez , Tewfik Sari , Michel Page et al.
[Research Report] RR-4407, INRIA. 2002
Reports inria-00072181v1

Eoulsan 2: an efficient workflow manager for reproducible bulk, long-read and single-cell transcriptomics analyses

Nathalie Lehmann , Sandrine Perrin , Claire Wallon , Xavier Bauquet , Vivien Deshaies et al.
2021
Preprints, Working Papers, ... hal-03784195v1