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A bunch of fun-guys: the whole-genome view of yeast evolution
H. Ochman
,
Vincent Daubin
,
E. Lerat
Trends in Genetics, 2005, 21, pp.1-3
Journal articles
hal-00427798v1
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Is the evolution of transposable elements modular?
E. Lerat
,
F. Brunet
,
C. Bazin
,
P. Capy
Genetica, 1999, 107, pp.15-25
Journal articles
hal-00428431v1
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Identification and Analysis of Transposable Elements in Genomic Sequences
Laurent Modolo
,
Emmanuelle Lerat
Maria S. Poptsova. Genome analysis, current procedures and applications, Caister, Academic Press, 2014, 978-1-908230-29-4
Book sections
hal-02099541v1
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The relative abundance of dinucleotides in transposable elements in five species
E. Lerat
,
P. Capy
,
C. Biémont
Molecular Biology and Evolution, 2002, 19, pp.964-967
Journal articles
hal-00427283v1
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The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes
Abdel Belkorchia
,
Cyrielle Gasc
,
Valérie Polonais
,
Nicolas Parisot
,
Nicolas Gallois
et al.
Journal articles
hal-01247479v1
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Transposable element activity in the transcriptomic analysis of mouse pancreatic tumors
Emmanuelle Lerat
,
Nelly Burlet
,
Vincent Navratil
,
Camilles Noûs
2021
Preprints, Working Papers, ...
hal-03345544v1
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Specific Activation of an I-Like Element in Drosophila Interspecific Hybrids
Elias a G Carnelossi
,
Emmanuelle Lerat
,
Hélène Henri
,
Sonia Martinez
,
Claudia M A Carareto
et al.
Journal articles
hal-01526700v1
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Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes
Diamantis Sellis
,
Frédéric Guérin
,
Olivier Arnaiz
,
Walker Pett
,
Emmanuelle Lerat
et al.
Journal articles
hal-03366429v1
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Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs
E. Lerat
Heredity, 2009, --, pp.1-14
Journal articles
hal-00539329v1
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Recent Bioinformatic Progress to Identify Epigenetic Changes Associated to Transposable Elements
Emmanuelle Lerat
Journal articles
hal-03738345v1
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Ψ-Φ: Exploring the outer limits of bacterial pseudogenes
E. Lerat
,
H. Ochman
Genome Research, 2004, 14, pp.2273--2278
Journal articles
hal-02379302v1
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Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes?
Romain Lannes
,
Carène Rizzon
,
Emmanuelle Lerat
Journal articles
hal-02120974v1
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Evolutionary origins of genomic repertoires in bacteria
E. Lerat
,
Vincent Daubin
,
H. Ochman
,
N.A. Moran
PLoS Biology, 2005, 3, pp.0807-0814
Journal articles
hal-00427770v1
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TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes
Emmanuelle Lerat
,
Marie Fablet
,
Laurent Modolo
,
Hélène Lopez-Maestre
,
Cristina Vieira
et al.
Journal articles
hal-01524877v1
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Population specific dynamics and selection patterns of transposable element insertions in European natural populations
Emmanuelle Lerat
,
Clément Goubert
,
Sara Guirao-Rico
,
Miriam Merenciano
,
Anne-Béatrice Dufour
et al.
Journal articles
hal-01965027v1
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Subcellular Localization of ENS-1/ERNI in Chick Embryonic Stem Cells
Sophie Blanc
,
Florence Ruggiero
,
Anne-Marie Birot
,
Hervé Acloque
,
Didier Decimo
et al.
Journal articles
hal-02096948v1
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An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice
Tanguy Lallemand
,
Martin Leduc
,
Claudine Landès
,
Carène Rizzon
,
Emmanuelle Lerat
et al.
Journal articles
hal-02977854v1
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Losing helena: The extinction of a drosophila line-like element
Rita Rebollo
,
Emmanuelle Lerat
,
Liliana Lopez Kleine
,
Christian Biémont
,
Cristina Vieira
et al.
Journal articles
hal-02668006v1
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Influence of the transposable element neighborhood on human gene expression in normal and tumor tissues
E. Lerat
,
M. Sémon
Gene, 2007, 396, pp.303-311
Journal articles
hal-00434594v1
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The evolutionary history of quorum-sensing in bacteria
E. Lerat
,
N.A. Moran
Molecular Biology and Evolution, 2004, 21, pp.903-913
Journal articles
hal-00427617v1
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Recognizing the pseudogenes in bacterial genomes
E. Lerat
,
H. Ochman
Nucleic Acids Research, 2005, 33, pp.3125-3132
Journal articles
hal-00427776v1
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Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae
Johan Panek
,
Hicham El Alaoui
,
Anne Mone
,
Serge Urbach
,
Edith Demettre
et al.
Journal articles
hal-01053924v1
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The era of reference genomes in conservation genomics
Giulio Formenti
,
Kathrin Theissinger
,
Carlos Fernandes
,
Iliana Bista
,
Aureliano Bombarely
et al.
Journal articles
hal-03854763v1
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A call for benchmarking transposable element annotation methods.
Douglas R Hoen
,
Glenn Hickey
,
Guillaume Bourque
,
Josep Casacuberta
,
Richard Cordaux
et al.
Journal articles
hal-01204840v1
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On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses
Emmanuelle Lerat
,
Josep Casacuberta
,
Cristian Chaparro
,
Cristina Vieira
Journal articles
hal-02093613v1
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A new tool to cross and analyze TE and gene annotations
Emmanuelle Lerat
Other publications
hal-03279813v1
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$Psi$-$Phi$: Exploring the outer limits of bacterial pseudogenes
E. Lerat
,
H. Ochman
Genome Research, 2004, 14, pp.2273-2278
Journal articles
hal-00427616v1
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“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
Marc Bailly-Bechet
,
Annabelle Haudry
,
Emmanuelle Lerat
Journal articles
hal-01332104v1
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Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila.
Marie Fablet
,
Emmanuelle Lerat
,
Rita Rebollo
,
Béatrice Horard
,
Nelly Burlet
et al.
Journal articles
hal-00850396v1
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The endogenous retrovirus ENS-1 provides active binding sites for transcription factors in embryonic stem cells that specify extra embryonic tissue
A. Mey
,
Hervé Acloque
,
Emmanuelle Lerat
,
S. Gounel
,
V. Tribollet
et al.
Journal articles
hal-02289815v1
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