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authIdHal_s : emmanuelle-lerat

A bunch of fun-guys: the whole-genome view of yeast evolution

H. Ochman , Vincent Daubin , E. Lerat
Trends in Genetics, 2005, 21, pp.1-3
Journal articles hal-00427798v1

Is the evolution of transposable elements modular?

E. Lerat , F. Brunet , C. Bazin , P. Capy
Genetica, 1999, 107, pp.15-25
Journal articles hal-00428431v1

Identification and Analysis of Transposable Elements in Genomic Sequences

Laurent Modolo , Emmanuelle Lerat
Maria S. Poptsova. Genome analysis, current procedures and applications, Caister, Academic Press, 2014, 978-1-908230-29-4
Book sections hal-02099541v1

The relative abundance of dinucleotides in transposable elements in five species

E. Lerat , P. Capy , C. Biémont
Molecular Biology and Evolution, 2002, 19, pp.964-967
Journal articles hal-00427283v1
Image document

The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes

Abdel Belkorchia , Cyrielle Gasc , Valérie Polonais , Nicolas Parisot , Nicolas Gallois et al.
PLoS ONE, 2015, 10 (9), pp.1-12. ⟨10.1371/journal.pone.0139075⟩
Journal articles hal-01247479v1

Transposable element activity in the transcriptomic analysis of mouse pancreatic tumors

Emmanuelle Lerat , Nelly Burlet , Vincent Navratil , Camilles Noûs
Preprints, Working Papers, ... hal-03345544v1
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Specific Activation of an I-Like Element in Drosophila Interspecific Hybrids

Elias a G Carnelossi , Emmanuelle Lerat , Hélène Henri , Sonia Martinez , Claudia M A Carareto et al.
Genome Biology and Evolution, 2014, 6, pp.1806 - 1817. ⟨10.1093/gbe/evu141⟩
Journal articles hal-01526700v1
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Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes

Diamantis Sellis , Frédéric Guérin , Olivier Arnaiz , Walker Pett , Emmanuelle Lerat et al.
Plos Biology, 2021, 19 (7), pp.e3001309. ⟨10.1371/journal.pbio.3001309⟩
Journal articles hal-03366429v1

Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs

E. Lerat
Heredity, 2009, --, pp.1-14
Journal articles hal-00539329v1

Recent Bioinformatic Progress to Identify Epigenetic Changes Associated to Transposable Elements

Emmanuelle Lerat
Frontiers in Genetics, 2022, 13, ⟨10.3389/fgene.2022.891194⟩
Journal articles hal-03738345v1

Ψ-Φ: Exploring the outer limits of bacterial pseudogenes

E. Lerat , H. Ochman
Genome Research, 2004, 14, pp.2273--2278
Journal articles hal-02379302v1
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Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes?

Romain Lannes , Carène Rizzon , Emmanuelle Lerat
Genes, 2019, 10 (3), pp.249. ⟨10.3390/genes10030249⟩
Journal articles hal-02120974v1

Evolutionary origins of genomic repertoires in bacteria

E. Lerat , Vincent Daubin , H. Ochman , N.A. Moran
PLoS Biology, 2005, 3, pp.0807-0814
Journal articles hal-00427770v1
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TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes

Emmanuelle Lerat , Marie Fablet , Laurent Modolo , Hélène Lopez-Maestre , Cristina Vieira et al.
Nucleic Acids Research, 2017, 45, pp.13. ⟨10.1093/nar/gkw953⟩
Journal articles hal-01524877v1

Population specific dynamics and selection patterns of transposable element insertions in European natural populations

Emmanuelle Lerat , Clément Goubert , Sara Guirao-Rico , Miriam Merenciano , Anne-Béatrice Dufour et al.
Molecular Ecology, 2018, pp.1-17. ⟨10.1111/mec.14963⟩
Journal articles hal-01965027v1
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Subcellular Localization of ENS-1/ERNI in Chick Embryonic Stem Cells

Sophie Blanc , Florence Ruggiero , Anne-Marie Birot , Hervé Acloque , Didier Decimo et al.
PLoS ONE, 2014, 9 (3), pp.e92039. ⟨10.1371/journal.pone.0092039⟩
Journal articles hal-02096948v1
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An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice

Tanguy Lallemand , Martin Leduc , Claudine Landès , Carène Rizzon , Emmanuelle Lerat et al.
Genes, 2020, 11 (9), pp.1046. ⟨10.3390/genes11091046⟩
Journal articles hal-02977854v1
Image document

Losing helena: The extinction of a drosophila line-like element

Rita Rebollo , Emmanuelle Lerat , Liliana Lopez Kleine , Christian Biémont , Cristina Vieira et al.
BMC Genomics, 2008, 9, pp.1-11. ⟨10.1186/1471-2164-9-149⟩
Journal articles hal-02668006v1

Influence of the transposable element neighborhood on human gene expression in normal and tumor tissues

E. Lerat , M. Sémon
Gene, 2007, 396, pp.303-311
Journal articles hal-00434594v1

The evolutionary history of quorum-sensing in bacteria

E. Lerat , N.A. Moran
Molecular Biology and Evolution, 2004, 21, pp.903-913
Journal articles hal-00427617v1

Recognizing the pseudogenes in bacterial genomes

E. Lerat , H. Ochman
Nucleic Acids Research, 2005, 33, pp.3125-3132
Journal articles hal-00427776v1
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Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae

Johan Panek , Hicham El Alaoui , Anne Mone , Serge Urbach , Edith Demettre et al.
PLoS ONE, 2014, 9 (6), pp.e100791. ⟨10.1371/journal.pone.0100791⟩
Journal articles hal-01053924v1

The era of reference genomes in conservation genomics

Giulio Formenti , Kathrin Theissinger , Carlos Fernandes , Iliana Bista , Aureliano Bombarely et al.
Trends in Ecology and Evolution, 2022, 37 (3), pp.197-202. ⟨10.1016/j.tree.2021.11.008⟩
Journal articles hal-03854763v1
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A call for benchmarking transposable element annotation methods.

Douglas R Hoen , Glenn Hickey , Guillaume Bourque , Josep Casacuberta , Richard Cordaux et al.
Mobile DNA, 2014, 6, pp.13. ⟨10.1186/s13100-015-0044-6⟩
Journal articles hal-01204840v1
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On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses

Emmanuelle Lerat , Josep Casacuberta , Cristian Chaparro , Cristina Vieira
Genes, 2019, 10 (4), pp.258. ⟨10.3390/genes10040258⟩
Journal articles hal-02093613v1
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A new tool to cross and analyze TE and gene annotations

Emmanuelle Lerat
Other publications hal-03279813v1

$Psi$-$Phi$: Exploring the outer limits of bacterial pseudogenes

E. Lerat , H. Ochman
Genome Research, 2004, 14, pp.2273-2278
Journal articles hal-00427616v1
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“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

Marc Bailly-Bechet , Annabelle Haudry , Emmanuelle Lerat
Mobile DNA, 2014, 5, pp.13. ⟨10.1186/1759-8753-5-13⟩
Journal articles hal-01332104v1

Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila.

Marie Fablet , Emmanuelle Lerat , Rita Rebollo , Béatrice Horard , Nelly Burlet et al.
FASEB Journal, 2009, 23 (5), pp.1482-9. ⟨10.1096/fj.08-123513⟩
Journal articles hal-00850396v1
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The endogenous retrovirus ENS-1 provides active binding sites for transcription factors in embryonic stem cells that specify extra embryonic tissue

A. Mey , Hervé Acloque , Emmanuelle Lerat , S. Gounel , V. Tribollet et al.
Retrovirology, 2012, 9 (1), pp.21. ⟨10.1186/1742-4690-9-21⟩
Journal articles hal-02289815v1