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authIdHal_s : eric-rivals
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Hardness of Optimal Spaced Seed Design

François Nicolas , Eric Rivals
CPM: Combinatorial Pattern Matching, Jun 2005, Jeju City, South Korea. pp.144-155, ⟨10.1007/11496656_13⟩
Conference papers lirmm-00106448v1
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Histoires de Duplication et Répétitions en Tandem

Eric Rivals
ALBIO, Montpellier, France. pp.P nd
Conference papers lirmm-00191527v1
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Analysis of four polymorphic minisatellites suggests frequent genetic exchanges among House Mouse subspecies

Eric Rivals , François Bonhomme , Annie Orth , Gemma R Grant , Alec J Jeffreys et al.
JOBIM'07 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2007, Marseille, pp.123-124
Conference papers lirmm-00195503v1
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Rearrangement Scenarios Guided by Chromatin Structure

Sylvain Pulicani , Pijus Simonaitis , Eric Rivals , Krister M. Swenson
RECOMB-CG: Comparative Genomics, Oct 2017, Barcelona, Spain. pp.141-155, ⟨10.1007/978-3-319-67979-2_8⟩
Conference papers hal-01791974v1
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Population genomics of picophytoplankton unveils novel chromosome hypervariability

Romain Blanc-Mathieu , Marc Krasovec , Maxime Hebrard , Sheree Yau , Elodie Desgranges et al.
Science Advances , 2017, 3 (7), Non paginé. ⟨10.1126/sciadv.1700239⟩
Journal articles lirmm-01842137v1
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Exploring the transcriptional landscape of gonadotroph tumor microenvironment with single cell RNA-seq

Benoît Aliaga , Julie Ripoll , Marie Chanal , Hector Hernandez-Vargas , Emmanuel Jouanneau et al.
SFBI. JOBIM 2021 - 21èmes Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. , 2021, Actes des Journées Ouvertes en Biologie, Informatique et Mathématiques
Conference poster lirmm-03544671v1
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Scalable and Versatile k-mer Indexing for High-Throughput Sequencing Data

Niko Välimäki , Eric Rivals
ISBRA'2013: International Symposium on Bioinformatics Research and Applications, May 2013, Charlotte, NC, United States. pp.237-248
Conference papers lirmm-00806103v1

Analysis of genomic data from high throughput sequencing: concepts and basic methods

Eric Rivals
Palaeogenomics Summer School, Oct 2011, Cargese, France
Conference papers lirmm-00832551v1
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Approximation of Greedy Algorithms for Max-ATSP, Maximal Compression, Maximal Cycle Cover, and Shortest Cyclic Cover of Strings

Bastien Cazaux , Eric Rivals
PSC: Prague Stringology Conference, Czech Technical University in Prague, Sep 2014, Prague, Czech Republic. pp.148-161
Conference papers lirmm-01100683v1

The power of greedy algorithms for approximating Max-ATSP, Cyclic Cover, and superstrings

Bastien Cazaux , Eric Rivals
Discrete Applied Mathematics, 2016, 212, pp.48-60. ⟨10.1016/j.dam.2015.06.003⟩
Journal articles lirmm-01286943v1

Purification Process Of Nascent DNA

Marcel Méchali , Christelle Cayrou , Philippe Coulombe , Eric Rivals
United States, Patent n° : US 61/238 315 - WO2011023827 (A1). 2010
Patents hal-03102676v1
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AquaPony: Visualization and interpretation of phylogeographic information on phylogenetic trees

Bastien Cazaux , Guillaume G. Castel , Eric Rivals
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2018, Marseilles, France. 2018, Journées Ouvertes en Biologie, Informatique et Mathématiques : JOBIM 2018 Abstracts
Conference poster hal-02733925v1
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Etude de l’évolution de la diversité génétique intrahôte du virus Puumala lors d’infections expérimentales

Caroline Tatard , Maxime Galan , Bastien Cazaux , Adelaïde Dubois , Sarah Madrières et al.
20èmes Journées Francophones de Virologie, Mar 2018, Paris, France. 2018
Conference poster hal-02789410v1
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Detecting Microsatellites within Genomes: No Exact Solution ?

Sébastien Leclercq , Philippe Jarne , Eric Rivals
Journées Ouvertes Biologie, Informatique, Mathématiques (JOBIM), Jul 2006, Bordeaux, France. , pp.11-12, 2006
Conference poster lirmm-00120204v1
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Linking BWT and XBW via Aho-Corasick Automaton: Applications to Run-Length Encoding

Bastien Cazaux , Eric Rivals
CPM 2019 - 30th Annual Symposium on Combinatorial Pattern Matching, University of Pisa, Jun 2019, Pise, Italy. pp.24:1--24:20, ⟨10.4230/LIPIcs.CPM.2019.24⟩
Conference papers lirmm-02382066v1
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Longest Common Subsequence Problem for Unoriented and Cyclic Strings

François Nicolas , Eric Rivals
[Research Report] 04003, LIRMM. 2004, pp.12
Reports lirmm-00109196v1

A new type of Hidden Markov Models to predict complex motif organization in protein sequences

Raluca Uricaru , Laurent Brehelin , Eric Rivals
Integrative Post-Genomics, 2006, Lyon, pp.43
Conference papers lirmm-00120171v1
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Modular Data Compression to Optimally Locate Regular Segments in Sequences. Application to DNA Sequence Analysis

O. Delgrange , Eric Rivals
IT'05: 26th Symposium on Information Theory in the Benelux, May 2005, Bruxelles (Belgique), pp.105-112
Conference papers lirmm-00106467v1
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Tiling an Interval of the Discrete Line

Olivier Bodini , Eric Rivals
CPM: Combinatorial Pattern Matching, Jul 2006, Barcelona, Spain. pp.117-128, ⟨10.1007/11780441_12⟩
Conference papers lirmm-00120188v1
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Hardness of Optimal Spaced Seed Design

François Nicolas , Eric Rivals
Journal of Computer and System Sciences, 2008, 74 (5), pp.831-849. ⟨10.1016/j.jcss.2007.10.001⟩
Journal articles lirmm-00194171v1
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Comparison of Minisatellites

Sèverine Bérard , Eric Rivals
RECOMB 2002 - 6th International Conference on Computational Molecular Biology, Apr 2002, Whashington, DC, United States. pp.67-76, ⟨10.1145/565196.565205⟩
Conference papers lirmm-00090351v1
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YOC, A new strategy for pairwise alignment of collinear genomes

Raluca Uricaru , Célia Michotey , Hélène Chiapello , Eric Rivals
BMC Bioinformatics, 2015, 16 (1), pp.16:111. ⟨10.1186/s12859-015-0530-3⟩
Journal articles lirmm-01170968v1
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Novel definition and algorithm for chaining fragments with proportional overlaps

Raluca Uricaru , Alban Mancheron , Eric Rivals
Journal of Computational Biology, 2011, 18 (9), pp.1141-1154. ⟨10.1089/cmb.2011.0126⟩
Journal articles lirmm-00834143v1

Estimation of sequence errors and capacity of genomic annotation in transcriptomic and DNA-protein interaction assays based on next generation sequencers

Nicolas Philippe , Anthony Boureux , Laurent Brehelin , Jorma Tarhio , Thérèse Commes et al.
Cellular Oncology, 2009, 31 (2), pp.145-146
Journal articles lirmm-00416012v1
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DNA Slippage Occurs at Microsatellite Loci without Minimal Threshold Length in Humans: A Comparative Genomic Approach

Sébastien Leclercq , Eric Rivals , Philippe Jarne
Genome Biology and Evolution, 2010, 2, pp.325-335. ⟨10.1093/gbe/evq023⟩
Journal articles hal-00493962v1

Detecting microsatellites within genomes: no exact solution?

Sébastien Leclercq , Eric Rivals , Philippe Jarne
Integrative Post-Genomics, Nov 2006, Lyon, pp.27
Conference papers lirmm-00120181v1
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A linear time algorithm for Shortest Cyclic Cover of Strings

Bastien Cazaux , Eric Rivals
Journal of Discrete Algorithms, 2016, 37, pp.56-67. ⟨10.1016/j.jda.2016.05.001⟩
Journal articles lirmm-01525995v1
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The multifaceted functions of the Fat mass and Obesity-associated protein (FTO) in normal and cancer cells

Sébastien Relier , Eric Rivals , Alexandre David
RNA Biology, 2022, 19 (1), pp.132-142. ⟨10.1080/15476286.2021.2016203⟩
Journal articles hal-03545725v1

Perspectives and challenges of Computational Pan-Genomics

Eric Rivals
LifeTime UnConference, Centre de Regulació Genòmica (CRG); centro nacional de análisis genómico (CNAG), Jul 2019, Barelone, Spain
Conference papers lirmm-02388116v1
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High performance text indexing and applications in life sciences

Eric Rivals
UK-France Bilateral International Meeting on High Performance Computing and Biomathematics, Feb 2019, Chicheley, United Kingdom
Conference papers lirmm-02093450v1