Hardness of Optimal Spaced Seed Design
François Nicolas
,
Eric Rivals
Conference papers
lirmm-00106448v1
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Histoires de Duplication et Répétitions en Tandem
Eric Rivals
ALBIO , Montpellier, France. pp.P nd
Conference papers
lirmm-00191527v1
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Analysis of four polymorphic minisatellites suggests frequent genetic exchanges among House Mouse subspecies
Eric Rivals
,
François Bonhomme
,
Annie Orth
,
Gemma R Grant
,
Alec J Jeffreys
et al.
JOBIM'07 : Journées Ouvertes Biologie, Informatique et Mathématiques , Jul 2007, Marseille, pp.123-124
Conference papers
lirmm-00195503v1
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Rearrangement Scenarios Guided by Chromatin Structure
Sylvain Pulicani
,
Pijus Simonaitis
,
Eric Rivals
,
Krister M. Swenson
Conference papers
hal-01791974v1
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Population genomics of picophytoplankton unveils novel chromosome hypervariability
Romain Blanc-Mathieu
,
Marc Krasovec
,
Maxime Hebrard
,
Sheree Yau
,
Elodie Desgranges
et al.
Journal articles
lirmm-01842137v1
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Exploring the transcriptional landscape of gonadotroph tumor microenvironment with single cell RNA-seq
Benoît Aliaga
,
Julie Ripoll
,
Marie Chanal
,
Hector Hernandez-Vargas
,
Emmanuel Jouanneau
et al.
SFBI.
JOBIM 2021 - 21èmes Journées Ouvertes de Biologie, Informatique et Mathématiques , Jul 2021, Paris, France.
, 2021, Actes des Journées Ouvertes en Biologie, Informatique et Mathématiques
Conference poster
lirmm-03544671v1
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Scalable and Versatile k-mer Indexing for High-Throughput Sequencing Data
Niko Välimäki
,
Eric Rivals
ISBRA'2013: International Symposium on Bioinformatics Research and Applications , May 2013, Charlotte, NC, United States. pp.237-248
Conference papers
lirmm-00806103v1
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Analysis of genomic data from high throughput sequencing: concepts and basic methods
Eric Rivals
Palaeogenomics Summer School , Oct 2011, Cargese, France
Conference papers
lirmm-00832551v1
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Approximation of Greedy Algorithms for Max-ATSP, Maximal Compression, Maximal Cycle Cover, and Shortest Cyclic Cover of Strings
Bastien Cazaux
,
Eric Rivals
PSC: Prague Stringology Conference , Czech Technical University in Prague, Sep 2014, Prague, Czech Republic. pp.148-161
Conference papers
lirmm-01100683v1
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The power of greedy algorithms for approximating Max-ATSP, Cyclic Cover, and superstrings
Bastien Cazaux
,
Eric Rivals
Journal articles
lirmm-01286943v1
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Purification Process Of Nascent DNA
Marcel Méchali
,
Christelle Cayrou
,
Philippe Coulombe
,
Eric Rivals
United States, Patent n° : US 61/238 315 - WO2011023827 (A1). 2010
Patents
hal-03102676v1
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AquaPony: Visualization and interpretation of phylogeographic information on phylogenetic trees
Bastien Cazaux
,
Guillaume G. Castel
,
Eric Rivals
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) , Jul 2018, Marseilles, France. 2018, Journées Ouvertes en Biologie, Informatique et Mathématiques : JOBIM 2018 Abstracts
Conference poster
hal-02733925v1
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Etude de l’évolution de la diversité génétique intrahôte du virus Puumala lors d’infections expérimentales
Caroline Tatard
,
Maxime Galan
,
Bastien Cazaux
,
Adelaïde Dubois
,
Sarah Madrières
et al.
20èmes Journées Francophones de Virologie , Mar 2018, Paris, France. 2018
Conference poster
hal-02789410v1
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Detecting Microsatellites within Genomes: No Exact Solution ?
Sébastien Leclercq
,
Philippe Jarne
,
Eric Rivals
Journées Ouvertes Biologie, Informatique, Mathématiques (JOBIM) , Jul 2006, Bordeaux, France.
, pp.11-12, 2006
Conference poster
lirmm-00120204v1
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Linking BWT and XBW via Aho-Corasick Automaton: Applications to Run-Length Encoding
Bastien Cazaux
,
Eric Rivals
CPM 2019 - 30th Annual Symposium on Combinatorial Pattern Matching , University of Pisa, Jun 2019, Pise, Italy. pp.24:1--24:20,
⟨10.4230/LIPIcs.CPM.2019.24⟩
Conference papers
lirmm-02382066v1
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Longest Common Subsequence Problem for Unoriented and Cyclic Strings
François Nicolas
,
Eric Rivals
[Research Report] 04003, LIRMM. 2004, pp.12
Reports
lirmm-00109196v1
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A new type of Hidden Markov Models to predict complex motif organization in protein sequences
Raluca Uricaru
,
Laurent Brehelin
,
Eric Rivals
Integrative Post-Genomics , 2006, Lyon, pp.43
Conference papers
lirmm-00120171v1
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Modular Data Compression to Optimally Locate Regular Segments in Sequences. Application to DNA Sequence Analysis
O. Delgrange
,
Eric Rivals
IT'05: 26th Symposium on Information Theory in the Benelux , May 2005, Bruxelles (Belgique), pp.105-112
Conference papers
lirmm-00106467v1
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Tiling an Interval of the Discrete Line
Olivier Bodini
,
Eric Rivals
Conference papers
lirmm-00120188v1
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Hardness of Optimal Spaced Seed Design
François Nicolas
,
Eric Rivals
Journal articles
lirmm-00194171v1
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Comparison of Minisatellites
Sèverine Bérard
,
Eric Rivals
RECOMB 2002 - 6th International Conference on Computational Molecular Biology , Apr 2002, Whashington, DC, United States. pp.67-76,
⟨10.1145/565196.565205⟩
Conference papers
lirmm-00090351v1
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YOC, A new strategy for pairwise alignment of collinear genomes
Raluca Uricaru
,
Célia Michotey
,
Hélène Chiapello
,
Eric Rivals
Journal articles
lirmm-01170968v1
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Novel definition and algorithm for chaining fragments with proportional overlaps
Raluca Uricaru
,
Alban Mancheron
,
Eric Rivals
Journal articles
lirmm-00834143v1
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Estimation of sequence errors and capacity of genomic annotation in transcriptomic and DNA-protein interaction assays based on next generation sequencers
Nicolas Philippe
,
Anthony Boureux
,
Laurent Brehelin
,
Jorma Tarhio
,
Thérèse Commes
et al.
Cellular Oncology , 2009, 31 (2), pp.145-146
Journal articles
lirmm-00416012v1
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DNA Slippage Occurs at Microsatellite Loci without Minimal Threshold Length in Humans: A Comparative Genomic Approach
Sébastien Leclercq
,
Eric Rivals
,
Philippe Jarne
Journal articles
hal-00493962v1
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Detecting microsatellites within genomes: no exact solution?
Sébastien Leclercq
,
Eric Rivals
,
Philippe Jarne
Integrative Post-Genomics , Nov 2006, Lyon, pp.27
Conference papers
lirmm-00120181v1
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A linear time algorithm for Shortest Cyclic Cover of Strings
Bastien Cazaux
,
Eric Rivals
Journal articles
lirmm-01525995v1
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The multifaceted functions of the Fat mass and Obesity-associated protein (FTO) in normal and cancer cells
Sébastien Relier
,
Eric Rivals
,
Alexandre David
Journal articles
hal-03545725v1
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Perspectives and challenges of Computational Pan-Genomics
Eric Rivals
LifeTime UnConference , Centre de Regulació Genòmica (CRG); centro nacional de análisis genómico (CNAG), Jul 2019, Barelone, Spain
Conference papers
lirmm-02388116v1
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High performance text indexing and applications in life sciences
Eric Rivals
UK-France Bilateral International Meeting on High Performance Computing and Biomathematics , Feb 2019, Chicheley, United Kingdom
Conference papers
lirmm-02093450v1
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