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authIdHal_s : guy-perriere

Genomic study of a novel magnetotactic Alphaproteobacteria uncovers the multiple ancestry of magnetotaxis

Caroline Monteil , Guy Perrière , Nicolas Menguy , Nicolas Ginet , Béatrice Alonso et al.
Environmental Microbiology, 2018, ⟨10.1111/1462-2920.14364⟩
Journal articles cea-01950927v1

Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns

H. Philippon , Céline Brochier-Armanet , G. Perriere
BMC Evolutionary Biology, 2015, 15, pp.226. ⟨10.1186/s12862-015-0498-7⟩
Journal articles hal-02025630v1
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From conservation to structure, studies of magnetosome associated cation diffusion facilitators (CDF) proteins in Proteobacteria

Keren-Khadmy Noa , Natalie Zeytuni , Nitzan Kutnowski , Guy Perriere , Caroline Monteil et al.
PLoS ONE, 2020, 15 (4), pp.e0231839. ⟨10.1371/journal.pone.0231839⟩
Journal articles hal-02625248v1
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Databases of Homologous Gene Families for Comparative Genomics

Simon Penel , Anne-Muriel Arigon Chifolleau , Jean-François Dufayard , Anne-Sophie Sertier , Vincent Daubin et al.
BMC Bioinformatics, 2009, 10 (Suppl.6) :S3, pp.13. ⟨10.1186/1471-2105-10-S6-S3⟩
Journal articles lirmm-00400099v1

HoSeql : automated homologous sequence identification in gene family databases

Anne-Muriel Arigon Chifolleau , G. Perrière , Manolo Gouy
Bioinformatics, 2006, 22 (14), pp.1786-1787. ⟨10.1093/bioinformatics/btl179⟩
Journal articles hal-00427893v1

The non-redundant Bacillus subtilis (NRSub) database: update 1998

G. Perrière , Manolo Gouy , T. Gojobori
Nucleic Acids Research, 1998, 26 (1), pp.60-62. ⟨10.1093/nar/26.1.60⟩
Journal articles hal-00428499v1

LALNVIEW: a graphical viewer for pairwise sequence alignments

L. Duret , E. Gasteiger , G. Perrière
Computer Applications in the Biosciences, 1996, 12, pp.507-510
Journal articles hal-00435026v1

A mathematical method for determining genome divergence and species delineation using AFLP

Christophe Mougel , J. Thioulouse , G. Perrière , X. Nesme
International Journal of Systematic and Evolutionary Microbiology, 2002, 52, pp.573-586. ⟨10.1099/00207713-52-2-573⟩
Journal articles hal-00427290v1

Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones.

Aurélien Ginolhac , Cyrille Jarrin , B. Gillet , P. Robe , P. Pujic et al.
Applied and Environmental Microbiology, 2004, 70, pp.5522-5527
Journal articles hal-00427601v1

JaDis: computing distances between nucleic acid sequences

I. Goncalves , M. Robinson , G. Perrière , Dominique Mouchiroud
Bioinformatics, 1999, 15, pp.424-425
Journal articles hal-00428448v1
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Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria

Caroline Monteil , Denis Grouzdev , Guy Perriere , Béatrice Alonso , Zoé Rouy et al.
Journal articles hal-02625381v1

ColiGene: object-centered representation for the study of E coli gene expressivity by sequence analysis

G. Perrière , Christian Gautier
Biochimie, 1993, 75, pp.415-422
Journal articles hal-00698133v1

The Enhanced Microbial Genomes Library

G. Perrière , P. Bessieres , B. Labedan
Nucleic Acids Research, 2000, 27, pp.63-65
Journal articles hal-00427097v1

WWW-query: an on-line retrieval system for biological sequence banks

G. Perrière , Manolo Gouy
Biochimie, 1996, 78 (5), pp.364-369. ⟨10.1016/0300-9084(96)84768-7⟩
Journal articles istex hal-00435034v1

RTKdb: database of Receptor Tyrosine Kinase

J. Grassot , G. Mouchiroud , G. Perrière
Nucleic Acids Research, 2003, 31, pp.353-358
Journal articles hal-00427432v1

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Jean-François Dufayard , L. Duret , Simon Penel , Manolo Gouy , F. Rechenmann et al.
Bioinformatics, 2005, 21 (11), pp.2596-603. ⟨10.1093/bioinformatics/bti325⟩
Journal articles hal-00427861v1
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Toward community standards in the quest for orthologs

Christophe Dessimoz , Toni Gabaldon , David Roos , Erik L L Sonnhammer , Javier Herrero et al.
Bioinformatics, 2012, 28 (6), pp.900-904. ⟨10.1093/bioinformatics/bts050⟩
Journal articles hal-01636872v1

Between-group analysis of microarray data

A.C. Culhane , G. Perrière , E.C. Considine , T.G. Cotter , D.G. Higgins et al.
Bioinformatics, 2002, 18, pp.1600-1608
Journal articles hal-00427316v1

HOBACGEN: database system for comparative genomics in bacteria

G. Perrière , L. Duret , Manolo Gouy
Genome Research, 2000, 10, pp.379-385. ⟨10.1101/gr.10.3.379⟩
Journal articles hal-00427099v1

A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

Vincent Daubin , Manolo Gouy , G. Perrière
Genome Research, 2002, 12, pp.1080-1090. ⟨10.1101/gr.187002⟩
Journal articles hal-00427259v1

Analysis of pFQ31 a 8551-bp cryptic plasmid from the symbiotic nitrogen-fixing actinomycete Frankia

C. Lavire , D. Louis , G. Perrière , J. Briolay , P. Normand et al.
FEMS Microbiology Letters, 2001, 197, pp.111-116. ⟨10.1111/j.1574-6968.2001.tb10591.x⟩
Journal articles hal-00427180v1

Update of NUREBASE: nuclear hormone receptor functional genomics

D. Ruau , J. Duarte , T. Ourjdal , G. Perrière , V. Laudet et al.
Nucleic Acids Research, 2004, 32, pp.D165-D167
Journal articles hal-00427648v1

Bioinformatics developments for NGS data analysis at PRABI

F. Picard , Guy Perrière
EMBNet.journal, 2011, 17, pp.12
Journal articles hal-02297662v1

Qualité des données NGS : de la séquence aux bases de données

Pierre Peyret , Julie Aubert , Vincent Breton , François Enault , Line Le Gall et al.
La génomique environnementale, ISTE Editions, 180 p., 2016, 978-1-78405-151-8
Book sections hal-01661251v1
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Exploring protein space: From hydrolase to ligase by substitution

Nir Hecht , Caroline Monteil , Guy Perriere , Marina Vishkautzan , Eyal Gur et al.
Molecular Biology and Evolution, 2020, ⟨10.1093/molbev/msaa215⟩
Journal articles hal-03046442v1

NRSub: a non-redundant data base for the Bacillus subtilis genome

G. Perrière , Manolo Gouy , T. Gojobori
Nucleic Acids Research, 1994, 22 (25), pp.5525-5529. ⟨10.1093/nar/22.25.5525⟩
Journal articles hal-00698135v1

Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains.

Julien Grassot , Manolo Gouy , Guy Perrière , Guy Mouchiroud
Molecular Biology and Evolution, 2006, 23 (6), pp.1232-41. ⟨10.1093/molbev/msk007⟩
Journal articles hal-00192848v1

Object-oriented knowledge bases for the analysis of prokaryotic and eukaryotic genomes

G. Perrière , F. Dorkeld , F. Rechenmann , Christian Gautier
In Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993, 1, pp.319-327
Journal articles hal-00698136v1

Analyse et exploitation de la diversité génétique des polykétides synthases de type I dans l'ADN metagénomique d'un sol

Aurélien Ginolhac , Sandrine Demanèche , Cyrille Jarrin , Patrick Robe , Fabrice Lefevre et al.
7ème colloque national "Ressources génétiques", Oct 2008, Strasbourg, France. pp.201-213
Conference papers hal-00338083v1

TPMS: a set of utilities for querying collections of gene trees.

Thomas Bigot , Vincent Daubin , Florent Lassalle , Guy Perrière
BMC Bioinformatics, 2013, 14, pp.109. ⟨10.1186/1471-2105-14-109⟩
Journal articles hal-00972257v1