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authIdHal_s : laurent-duret

Modélisation des systèmes biologiques, bioinformatique

Olivier Gascuel , P. Benas , C. Brun , D. Burnouf , Alexandre de Brevern et al.
Rapport de conjoncture 2010 du Comité national de la recherche scientifique, CNRS Editions, chapitre 43, 845-858, 2011, ISBN 978-2-271-07263-4
Book sections hal-00799641v1
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The Red Queen model of recombination hot-spot evolution: a theoretical investigation

Thibault Latrille , L. Duret , Nicolas Lartillot
Philosophical Transactions of the Royal Society B: Biological Sciences, 2017, ⟨10.1098/rstb.2016.0463⟩
Journal articles hal-01891448v1

Unbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition

Laurent Guéguen , Laurent Duret
Molecular Biology and Evolution, 2018, 35 (3), pp.734-742. ⟨10.1093/molbev/msx308⟩
Journal articles hal-02349724v1

Global trends of whole genome duplications revealed by the genome sequence of the ciliate Paramecium tetraurelia

Jean-Marc Aury , Olivier Jaillon , * Laurent Duret , Benjamin Noel , Claire Jubin et al.
Nature, 2006, 444 (7116), pp.171-178. ⟨10.1038/nature05230⟩
Journal articles hal-00090904v1

Identification and molecular analysis of BANP

Anne-Marie Birot , Laurent Duret , Laurent Bartholin , Bénédicte Santalucia , Isabelle Tigaud et al.
Gene, 2000, 253 (2), pp.189-196. ⟨10.1016/S0378-1119(00)00244-4⟩
Journal articles istex hal-02998585v1

Mutation Patterns in the Human Genome:More Variable Than Expected

L. Duret
PLoS Biology, 2009, 7(2) e1000028, pp.803-806
Journal articles hal-00428326v1

New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling

L. Duret , N. Guex , M.C. Peitsch , A. Bairoch
Genome Research, 1998, 8, pp.348-353
Journal articles hal-00428485v1

Eloge de l'ADN poubelle

Laurent Duret , Sylvain Charlat
Pour la science, 2013, 81, pp.10--17
Journal articles hal-02140476v1
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Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes.

Brian P. Cusack , Peter F. Arndt , L. Duret , Hugues Roest Crollius
PLoS Genetics, 2011, 7 (10), pp.e1002276. ⟨10.1371/journal.pgen.1002276⟩
Journal articles inserm-00711772v1

tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

L. Duret
Trends in Genetics, 2000, 16, pp.287-289
Journal articles hal-00427076v1

Organisation Fonctionnement et Evolution des Génomes de Métazoaires : Mais où est donc passée la sélection naturelle ?

L. Duret
incollection, 2001, --, pp.287-289
Journal articles hal-00427170v1

The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology

Frédéric Mallet , O. Bouton , S. Prudhomme , V. Cheynet , G. Oriol et al.
Proceedings of the National Academy of Sciences of the United States of America, 2004, 101, pp.1731-1736
Journal articles hal-00427686v1

Neutral effect of recombination on base composition in Drosophila

Gabriel Marais , Dominique Mouchiroud , L. Duret
Genetical Research, 2003, 81, pp.79-89
Journal articles hal-00427447v1

Comparative population genomics in animals uncovers the determinants of genetic diversity

Jonathan Romiguier , P Gayral , M Ballenghien , Arnaud Bernard , V Cahais et al.
Nature, 2014, 515 (7526), pp.261-263. ⟨10.1038/nature13685⟩
Journal articles hal-01313724v1
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Meiotic recombination favors the spreading of deleterious mutations in human populations

Anamaria Necsulea , L. Duret , Alexandra Popa , David N. Cooper , Peter Stentson et al.
Human Mutation, 2011, 32 (2), pp.198-206. ⟨10.1002/humu.21407⟩
Journal articles hal-00610795v1

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Jean-François Dufayard , L. Duret , Simon Penel , Manolo Gouy , F. Rechenmann et al.
Bioinformatics, 2005, 21 (11), pp.2596-603. ⟨10.1093/bioinformatics/bti325⟩
Journal articles hal-00427861v1
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Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot

Daphné Reiss , Gladys Mialdea , Vincent Miele , Damien M. de Vienne , Jean Peccoud et al.
PLoS Genetics, 2019, 15 (2), pp.e1007965. ⟨10.1371/journal.pgen.1007965⟩
Journal articles hal-02140494v1

Expected Relationship Between the Silent Substitution Rate and the GC Content: Implications for the Evolution of Isochores

G. Piganeau , Dominique Mouchiroud , L. Duret , Christian Gautier
Journal of Molecular Evolution, 2002, 54, pp.129-133
Journal articles hal-00427292v1
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How consistent is RAD‐seq divergence with DNA‐barcode based clustering in insects?

Marie Cariou , Hélène Henri , Sonia Martinez , Laurent Duret , Sylvain Charlat et al.
Molecular Ecology Resources, 2020, 20 (5), pp.1294-1298. ⟨10.1111/1755-0998.13178⟩
Journal articles hal-03017182v1

The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.

Franck Picard , Jean-Charles Cadoret , Benjamin Audit , Alain Arneodo , Adriana A. Alberti et al.
PLoS Genetics, 2014, 10 (5), pp.e1004282. ⟨10.1371/journal.pgen.1004282⟩
Journal articles hal-00995097v1
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The Red Queen Model of Recombination Hotspots Evolution in the Light of Archaic and Modern Human Genomes

Y Lesecque , S. S. Glemin , N. Lartillot , D. Mouchiroud , L. Duret et al.
PLoS Genetics, 2014, 10, pp.e1004790. ⟨10.1371/journal.pgen.1004790⟩
Journal articles hal-02369480v1

ISG20L2, a novel vertebrate nucleolar exoribonuclease involved in Ribosome biogenesis.

Yohann Couté , Karine Kindbeiter , Stéphane Belin , Régis Dieckmann , L. Duret et al.
Molecular and Cellular Proteomics, 2008, 7, epub ahead of print. ⟨10.1074/mcp.M700510-MCP200⟩
Journal articles hal-00196384v1

The covariation between TpA deficiency CpG deficiency and G+C content of human isochores is due to a mathematical artifact

L. Duret , N. Galtier
Molecular Biology and Evolution, 2000, 17, pp.1620-1625
Journal articles hal-00427077v1

Why do genes have introns? Recombination might add a new piece to the puzzle

L. Duret
Trends in Genetics, 2001, 17, pp.172-175
Journal articles hal-00427168v1

Placenta-Specific INSL4 Expression Is Mediated by a Human Endogenous Retrovirus Element

I. Bièche , A. Laurent , I. Laurendeau , L. Duret , Y. Giovangrandi et al.
Biology of Reproduction, 2003, 68, pp.1422-1429
Journal articles hal-00427363v1

The Decline of Isochores in Mammals: An Assessment of the GC Content Variation Along the Mammalian Phylogeny

E. Belle , L. Duret , N. Galtier , A. Eyre-Walker
Journal of Molecular Evolution, 2004, 58, pp.653-660
Journal articles hal-00427539v1

Evidence that functional transcription units cover at least half of the human genome

M. Sémon , L. Duret
Trends in Genetics, 2004, 20, pp.229-232
Journal articles hal-00427647v1

Natural history of the ERVWE1 endogenous retroviral locus

B. Bonnaud , J. Beliaeff , O. Bouton , G. Oriol , L. Duret et al.
Retrovirology, 2005, 2, pp.1-7
Journal articles hal-00427715v1

Insights into social insects from the genome of the honeybee Apis mellifera

G.M. Weinstock , G.E. Robinson , R.A. Gibbs , K.C. Worley , J.D. Evans et al.
Nature, 2006, 443, pp.931-949
Journal articles hal-00428044v1

Monoallelic expression and tissue specificity are associated with high crossover rates

A. Necşulea , M. Sémon , L. Duret , L.D. Hurst
Trends in Genetics, 2009, 25(12), pp.519-522
Journal articles hal-00539368v1