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authIdHal_s : lcottret

A laser dissection-RNAseq analysis highlights the activation of cytokinin pathways by nod factors in the Medicago truncatula root epidermis

Marie-Françoise Jardinaud , Stephane Boivin , Nathalie N. Rodde , Olivier Catrice , Anna Kisiala et al.
Plant Physiology, 2016, 171 (3), pp.2256-2276. ⟨10.1104/pp.16.00711⟩
Journal articles hal-02639350v1

An introduction to metabolic networks and their structural analysis.

Vincent Lacroix , Ludovic Cottret , Patricia Thebault , Marie-France Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2008, 5 (4), pp.594-617. ⟨10.1109/TCBB.2008.79⟩
Journal articles hal-00355497v1
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Evolutionary History of Plant LysM Receptor Proteins Related to Root Endosymbiosis

Clare Gough , Ludovic Cottret , Benoît Lefebvre , Jean-Jacques Bono
Frontiers in Plant Science, 2018, 9, ⟨10.3389/fpls.2018.00923⟩
Journal articles hal-02366084v1
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Rhizocarpon geographicum Lichen Discloses a Highly Diversified Microbiota Carrying Antibiotic Resistance and Persistent Organic Pollutant Tolerance

Alice Miral , Adam Kautsky , Susete Alves Carvalho , Ludovic Cottret , Anne-Yvonne Guillerm-Erckelboudt et al.
Microorganisms, 2022, 10 (9), 19 p. ⟨10.3390/microorganisms10091859⟩
Journal articles hal-03798720v1
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Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets

Vicente Acuña , Etienne Birmelé , Ludovic Cottret , Pierluigi Crescenzi , Fabien Jourdan et al.
Theoretical Computer Science, 2012, 457, pp.1--9. ⟨10.1016/j.tcs.2012.07.023⟩
Journal articles hal-00764025v1
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EffectorK, a comprehensive resource to mine for Ralstonia, Xanthomonas, and other published effector interactors in the Arabidopsis proteome

Manuel Gonzalez‐fuente , Sébastien Carrere , Dario Monachello , Benjamin G Marsella , Anne‐claire Cazalé et al.
Molecular Plant Pathology, 2020, 21 (10), pp.1257-1270. ⟨10.1111/mpp.12965⟩
Journal articles hal-03052440v1

Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum.

Lilia Brinza , José Viñuelas , Ludovic Cottret , Federica Calevro , Yvan Rahbé et al.
Comptes Rendus Biologies, 2009, 332 (11), pp.1034-49. ⟨10.1016/j.crvi.2009.09.007⟩
Journal articles istex hal-00445861v1
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Visualization of time-series data in the context of metabolic networks with Systrip Software

Jonathan Dubois , Ludovic Cottret , Amine Ghozlane , David Auber , Frédéric Bringaud et al.
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France
Conference papers hal-00838725v1

Development of the Acyrthosiphon pisum Cyc database (ApsCyc) : from genome sequence to metabolic network analyses

Augusto Vellozo , Stefano Colella , Ludovic Cottret , Gérard Febvay , Federica Calevro et al.
Integrative Post-Genomics - IPG'08, 2008, Lyon, novembre 2008, France
Conference papers hal-02821711v1
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Multi-organ genome-scale metabolic modeling of tomato plant

Leo Gerlin , Antoine Escourrou , Ludovic Cottret , Stephane Genin , Caroline Baroukh et al.
7th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2021), Mar 2021, Virtual, France
Conference papers hal-03350567v1

Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes that can stimulate root development

Claudia Bartoli , Stéphane Boivin , Marta Marchetti , Carine Gris , Virginie Gasciolli et al.
Environmental Microbiology, 2022, ⟨10.1111/1462-2920.16148⟩
Journal articles hal-03788989v1

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

Hélène Badouin , Jerome Gouzy , Christopher Grassa , Florent Murat , S Evan Staton et al.
Nature, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩
Journal articles hal-01603287v1

Caractérisation et modélisation de la « fonction symbiotique » de Buchnera aphidicola chez le puceron du pois Acyrthosiphon pisum

Hubert Charles , Federica Calevro , Stefano Colella , Jean-Michel Fayard , Gérard Febvay et al.
Séminaire INRA AgroBI, 2008, Bordeaux, décembre 2008, France
Conference papers hal-02824972v1
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Absence of a core metabolic network common to symbiotic bacteria

Cecilia Coimbra Klein , Ludovic Cottret , Hubert Charles , Christian Gautier , Ana Tereza Ribeiro de Vasconcelos et al.
6. Meeting GDRE-RA Comparative genomics, Nov 2011, Lyon, France. 33 diapositives
Conference papers hal-02806316v1
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Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks

Jonathan Dubois , Ludovic Cottret , Amine Ghozlane , David Auber , Frédéric Bringaud et al.
16th International Conference on Information Visualization (IV'12), Jul 2012, Montpellier, France. pp.4771a204
Conference papers hal-00742176v1
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Deciphering the connectivity structure of biological networks using MixNet

Franck Picard , Vincent Miele , Jean-Jacques J.-J. Daudin , Ludovic Cottret , Stephane S. Robin et al.
BMC Bioinformatics, 2009, 10, pp.1-11. ⟨10.1186/1471-2105-10-S6-S17⟩
Journal articles hal-02658961v1
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Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes and can stimulate root development and colonization by arbuscular mycorrhizal fungi

Claudia Bartoli , Stéphane Boivin , Marta Marchetti , Carine Gris , Virginie Gasciolli et al.
2020
Preprints, Working Papers, ... hal-02967159v1
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Exploration of the growth-virulence trade-off in the plant pathogen Ralstonia solanacearum species complex

Caroline Baroukh , Emma Pires , Ludovic Cottret , Remi Peyraud , Stéphane Genin et al.
MicrobiOccitanie 2019 - Rencontre des Microbiologistes Région Occitanie, Feb 2019, Montpellier, France
Conference papers hal-02786961v1

Réévaluation génomique de la fonction de transport chez Buchnera, endocytobiote des pucerons : une faible diversité de transporteurs et une organisation membranaire variable

Hubert Charles , Severine Balmand , Araceli Lamelas , Ludovic Cottret , Vicente Pérez-Brocal et al.
4. Réunion Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés, Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). FRA., Nov 2011, Paris, France
Conference papers hal-02808863v1

Enumerating precursor sets of target metabolites in a metabolic network

L. Cottret , P.V. Milreu , Vicente Acuna , A. Marchetti-Spaccamela , F. Viduani Martinez et al.
WABI 2008 - 8th International Workshop on Algorithms in Bioinformatics, Sep 2008, Karlsruhe, Germany. pp.233-244
Conference papers hal-00391292v1

The Acyrthosiphon pisum Cyc database (AcypiCyc) created using a novel BioCyc Annotation Database System (CycADS): a useful tool to explore and study the pea aphid metabolism

Stefano Colella , A. Vellozo , Ludovic Cottret , Gérard Febvay , Federica Calevro et al.
5th Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 2, Barcelona, Espagne, juin 2009, Jun 2009, France
Conference papers hal-00498411v1
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An integrated approach reveals how lipo‐chitooligosaccharides interact with the lysin motif receptor‐like kinase MtLYR3

Younes Bouchiba , Jérémy Esque , Ludovic Cottret , Maude Maréchaux , Mégane Gaston et al.
Protein Science, 2022, 31 (6), 17 p. ⟨10.1002/pro.4327⟩
Journal articles hal-03684572v1
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Identification and phylogenetic analyses of VASt, an uncharacterized protein domain associated with lipid-binding domains in Eukaryotes

Mehdi Khafif , Ludovic Cottret , Claudine Balague , Sylvain Raffaele
BMC Bioinformatics, 2014, 15, 12 p. ⟨10.1186/1471-2105-15-222⟩
Journal articles hal-02636200v1

Régulation génétique et métabolique chez Buchnera aphidicola (AgroBi 2006)

L. Cottret , L. Brinza , J. Vinuelas , G. Duport , Federica Calevro et al.
Journée INRA-INRIA "Insertion des mathématiques dans les approches biologiques : du gène à l'organisme", 2006, Lyon (France), décembre 2006, France. pp.1-1
Conference papers hal-00391289v1

AcypiCyc (Acyrthosiphon pisum Cyc database) and CycADS (Cyc Annotation Database System): moving from genome sequence annotation to metabolic network analyses

Stefano Colella , A. Vellozo , L. Cottret , G. Febvay , Federica Calevro et al.
8th International Symposium on Aphids (8 ISA 2009), 2009, Catania (Italie), juin 2009, France. pp.1-1
Conference papers hal-00391280v1

CycADS: an annotation management system for the development and update of BioCyc metabolic network databases

A. Vellozo , Patrice Baa-Puyoulet , A. Veron , Jaime Huerta-Cepas , Ludovic Cottret et al.
1st International Workshop on Information Systems for Insect Pests, Rennes, FRANCE, 2009, France
Conference papers hal-00496032v1

Investigation of the metabolic network of Xylella fastidiosa responsible of its fastidious growth

Leo Gerlin , Ludovic Cottret , Sophie Cesbron , Geraldine G. Taghouti , Marie-Agnès Jacques et al.
3rd European Conference on Xylella fastidiosa and the final meeting of the XF-ACTORS project, Apr 2021, Virtual, France
Conference papers hal-03350588v1
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MtEFD and MtEFD2: Two transcription factors with distinct neofunctionalization in symbiotic nodule development

Marie-Françoise Jardinaud , Justine Fromentin , Marie-Christine Auriac , Sandra Moreau , Yann Pecrix et al.
Plant Physiology, 2022, 189 (3), pp.1587 - 1607. ⟨10.1093/plphys/kiac177⟩
Journal articles hal-03728310v1
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Exploration of the core metabolism of symbiotic bacteria

Cecilia Coimbra Klein , Ludovic Cottret , Janice Kielbassa , Hubert Charles , Christian Gautier et al.
BMC Genomics, 2012, 13 (1), pp.438. ⟨10.1186/1471-2164-13-438⟩
Journal articles hal-00784396v1

Development of the Acyrthosiphon pisum Cyc database (ApsCyc): from genome sequence to metabolic network analyses

A. Vellozo , Stefano Colella , L. Cottret , G. Febvay , Federica Calevro et al.
Integrative Post-Genomics - IPG'08, 2008, Lyon (France), novembre 2008, France. pp.1-1
Conference papers hal-00391519v1