A laser dissection-RNAseq analysis highlights the activation of cytokinin pathways by nod factors in the Medicago truncatula root epidermis
Marie-Françoise Jardinaud
,
Stephane Boivin
,
Nathalie N. Rodde
,
Olivier Catrice
,
Anna Kisiala
et al.
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hal-02639350v1
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An introduction to metabolic networks and their structural analysis.
Vincent Lacroix
,
Ludovic Cottret
,
Patricia Thebault
,
Marie-France Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics , 2008, 5 (4), pp.594-617.
⟨10.1109/TCBB.2008.79⟩
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hal-00355497v1
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Evolutionary History of Plant LysM Receptor Proteins Related to Root Endosymbiosis
Clare Gough
,
Ludovic Cottret
,
Benoît Lefebvre
,
Jean-Jacques Bono
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hal-02366084v1
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Rhizocarpon geographicum Lichen Discloses a Highly Diversified Microbiota Carrying Antibiotic Resistance and Persistent Organic Pollutant Tolerance
Alice Miral
,
Adam Kautsky
,
Susete Alves Carvalho
,
Ludovic Cottret
,
Anne-Yvonne Guillerm-Erckelboudt
et al.
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hal-03798720v1
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Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets
Vicente Acuña
,
Etienne Birmelé
,
Ludovic Cottret
,
Pierluigi Crescenzi
,
Fabien Jourdan
et al.
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hal-00764025v1
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EffectorK, a comprehensive resource to mine for Ralstonia, Xanthomonas, and other published effector interactors in the Arabidopsis proteome
Manuel Gonzalez‐fuente
,
Sébastien Carrere
,
Dario Monachello
,
Benjamin G Marsella
,
Anne‐claire Cazalé
et al.
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hal-03052440v1
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Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum.
Lilia Brinza
,
José Viñuelas
,
Ludovic Cottret
,
Federica Calevro
,
Yvan Rahbé
et al.
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hal-00445861v1
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Visualization of time-series data in the context of metabolic networks with Systrip Software
Jonathan Dubois
,
Ludovic Cottret
,
Amine Ghozlane
,
David Auber
,
Frédéric Bringaud
et al.
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013) , Jul 2013, France
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hal-00838725v1
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Development of the Acyrthosiphon pisum Cyc database (ApsCyc) : from genome sequence to metabolic network analyses
Augusto Vellozo
,
Stefano Colella
,
Ludovic Cottret
,
Gérard Febvay
,
Federica Calevro
et al.
Integrative Post-Genomics - IPG'08 , 2008, Lyon, novembre 2008, France
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hal-02821711v1
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Multi-organ genome-scale metabolic modeling of tomato plant
Leo Gerlin
,
Antoine Escourrou
,
Ludovic Cottret
,
Stephane Genin
,
Caroline Baroukh
et al.
7th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2021) , Mar 2021, Virtual, France
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hal-03350567v1
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Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes that can stimulate root development
Claudia Bartoli
,
Stéphane Boivin
,
Marta Marchetti
,
Carine Gris
,
Virginie Gasciolli
et al.
Journal articles
hal-03788989v1
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The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
Hélène Badouin
,
Jerome Gouzy
,
Christopher Grassa
,
Florent Murat
,
S Evan Staton
et al.
Journal articles
hal-01603287v1
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Caractérisation et modélisation de la « fonction symbiotique » de Buchnera aphidicola chez le puceron du pois Acyrthosiphon pisum
Hubert Charles
,
Federica Calevro
,
Stefano Colella
,
Jean-Michel Fayard
,
Gérard Febvay
et al.
Séminaire INRA AgroBI , 2008, Bordeaux, décembre 2008, France
Conference papers
hal-02824972v1
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Absence of a core metabolic network common to symbiotic bacteria
Cecilia Coimbra Klein
,
Ludovic Cottret
,
Hubert Charles
,
Christian Gautier
,
Ana Tereza Ribeiro de Vasconcelos
et al.
6. Meeting GDRE-RA Comparative genomics , Nov 2011, Lyon, France. 33 diapositives
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hal-02806316v1
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Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks
Jonathan Dubois
,
Ludovic Cottret
,
Amine Ghozlane
,
David Auber
,
Frédéric Bringaud
et al.
16th International Conference on Information Visualization (IV'12) , Jul 2012, Montpellier, France. pp.4771a204
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hal-00742176v1
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Deciphering the connectivity structure of biological networks using MixNet
Franck Picard
,
Vincent Miele
,
Jean-Jacques J.-J. Daudin
,
Ludovic Cottret
,
Stephane S. Robin
et al.
Journal articles
hal-02658961v1
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Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes and can stimulate root development and colonization by arbuscular mycorrhizal fungi
Claudia Bartoli
,
Stéphane Boivin
,
Marta Marchetti
,
Carine Gris
,
Virginie Gasciolli
et al.
2020
Preprints, Working Papers, ...
hal-02967159v1
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Exploration of the growth-virulence trade-off in the plant pathogen Ralstonia solanacearum species complex
Caroline Baroukh
,
Emma Pires
,
Ludovic Cottret
,
Remi Peyraud
,
Stéphane Genin
et al.
MicrobiOccitanie 2019 - Rencontre des Microbiologistes Région Occitanie , Feb 2019, Montpellier, France
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hal-02786961v1
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Réévaluation génomique de la fonction de transport chez Buchnera, endocytobiote des pucerons : une faible diversité de transporteurs et une organisation membranaire variable
Hubert Charles
,
Severine Balmand
,
Araceli Lamelas
,
Ludovic Cottret
,
Vicente Pérez-Brocal
et al.
4. Réunion Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés , Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). FRA., Nov 2011, Paris, France
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hal-02808863v1
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Enumerating precursor sets of target metabolites in a metabolic network
L. Cottret
,
P.V. Milreu
,
Vicente Acuna
,
A. Marchetti-Spaccamela
,
F. Viduani Martinez
et al.
WABI 2008 - 8th International Workshop on Algorithms in Bioinformatics , Sep 2008, Karlsruhe, Germany. pp.233-244
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hal-00391292v1
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The Acyrthosiphon pisum Cyc database (AcypiCyc) created using a novel BioCyc Annotation Database System (CycADS): a useful tool to explore and study the pea aphid metabolism
Stefano Colella
,
A. Vellozo
,
Ludovic Cottret
,
Gérard Febvay
,
Federica Calevro
et al.
5th Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 2, Barcelona, Espagne, juin 2009 , Jun 2009, France
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hal-00498411v1
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An integrated approach reveals how lipo‐chitooligosaccharides interact with the lysin motif receptor‐like kinase MtLYR3
Younes Bouchiba
,
Jérémy Esque
,
Ludovic Cottret
,
Maude Maréchaux
,
Mégane Gaston
et al.
Journal articles
hal-03684572v1
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Identification and phylogenetic analyses of VASt, an uncharacterized protein domain associated with lipid-binding domains in Eukaryotes
Mehdi Khafif
,
Ludovic Cottret
,
Claudine Balague
,
Sylvain Raffaele
Journal articles
hal-02636200v1
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Régulation génétique et métabolique chez Buchnera aphidicola (AgroBi 2006)
L. Cottret
,
L. Brinza
,
J. Vinuelas
,
G. Duport
,
Federica Calevro
et al.
Journée INRA-INRIA "Insertion des mathématiques dans les approches biologiques : du gène à l'organisme" , 2006, Lyon (France), décembre 2006, France. pp.1-1
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hal-00391289v1
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AcypiCyc (Acyrthosiphon pisum Cyc database) and CycADS (Cyc Annotation Database System): moving from genome sequence annotation to metabolic network analyses
Stefano Colella
,
A. Vellozo
,
L. Cottret
,
G. Febvay
,
Federica Calevro
et al.
8th International Symposium on Aphids (8 ISA 2009) , 2009, Catania (Italie), juin 2009, France. pp.1-1
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hal-00391280v1
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CycADS: an annotation management system for the development and update of BioCyc metabolic network databases
A. Vellozo
,
Patrice Baa-Puyoulet
,
A. Veron
,
Jaime Huerta-Cepas
,
Ludovic Cottret
et al.
1st International Workshop on Information Systems for Insect Pests, Rennes, FRANCE , 2009, France
Conference papers
hal-00496032v1
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Investigation of the metabolic network of Xylella fastidiosa responsible of its fastidious growth
Leo Gerlin
,
Ludovic Cottret
,
Sophie Cesbron
,
Geraldine G. Taghouti
,
Marie-Agnès Jacques
et al.
3rd European Conference on Xylella fastidiosa and the final meeting of the XF-ACTORS project , Apr 2021, Virtual, France
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hal-03350588v1
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MtEFD and MtEFD2: Two transcription factors with distinct neofunctionalization in symbiotic nodule development
Marie-Françoise Jardinaud
,
Justine Fromentin
,
Marie-Christine Auriac
,
Sandra Moreau
,
Yann Pecrix
et al.
Journal articles
hal-03728310v1
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Exploration of the core metabolism of symbiotic bacteria
Cecilia Coimbra Klein
,
Ludovic Cottret
,
Janice Kielbassa
,
Hubert Charles
,
Christian Gautier
et al.
Journal articles
hal-00784396v1
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Development of the Acyrthosiphon pisum Cyc database (ApsCyc): from genome sequence to metabolic network analyses
A. Vellozo
,
Stefano Colella
,
L. Cottret
,
G. Febvay
,
Federica Calevro
et al.
Integrative Post-Genomics - IPG'08 , 2008, Lyon (France), novembre 2008, France. pp.1-1
Conference papers
hal-00391519v1
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