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Deep learning from phylogenies to understand the dynamics of epidemics
Jakub Voznica
,
Anna Zhukova
,
Tristan Dot
,
Kary Ocaña
,
Frédéric Lemoine
et al.
Epidemics - 7th International Conference on Infectious Disease Dynamics, Dec 2019, Charleston, United States
Conference papers
pasteur-02405720v1
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Distribution and asymptotic behavior of the phylogenetic transfer distance
Miraine Dávila Felipe
,
Jean-Baka Domelevo Entfellner
,
Frédéric Lemoine
,
Jakub Truszkowski
,
Olivier Gascuel
et al.
Journal articles
pasteur-02404376v1
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Deciphering RNA G-quadruplex function during the early steps of HIV-1 infection
Samir Amrane
,
Chloé Jaubert
,
Amina Bedrat
,
Tiffany Rundstadler
,
Patricia Recordon-Pinson
et al.
Journal articles
hal-03874577v1
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Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities
Sarah Cohen-Boulakia
,
Khalid Belhajjame
,
Olivier Collin
,
Jérôme Chopard
,
Christine Froidevaux
et al.
Journal articles
hal-01516082v1
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Origin, evolution and global spread of SARS-CoV-2
Anna Zhukova
,
Luc Blassel
,
Frédéric Lemoine
,
Marie Morel
,
Jakub Voznica
et al.
Journal articles
pasteur-03038752v1
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A new route for integron cassette dissemination among bacterial genomes
Céline Loot
,
Gael A Millot
,
Egill Richard
,
Claire Vit
,
Baptiste Darracq
et al.
2022
Preprints, Working Papers, ...
pasteur-03826688v1
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Identification of novel recurrent ETV6-IgH fusions in primary central nervous system lymphoma
Aurélie Bruno
,
Karim Labreche
,
Mailys Daniau
,
Blandine Boisselier
,
Guillaume Gauchotte
et al.
Journal articles
pasteur-02862388v1
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DEEP LEARNING FROM PHYLOGENIES TO UNCOVER THE EPIDEMIOLOGICAL DYNAMICS OF OUTBREAKS
J. Voznica
,
A. Zhukova
,
V. Boskova
,
E. Saulnier
,
F. Lemoine
et al.
Journal articles
hal-03861407v1
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SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes.
Frederic Lemoine
,
Bernard Labedan
,
Olivier Lespinet
Journal articles
hal-00354657v1
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GenoQuery: a new querying module for functional annotation in a genomic warehouse.
Frédéric Lemoine
,
Bernard Labedan
,
Christine Froidevaux
Journal articles
hal-00297225v1
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Considerable escape of SARS-CoV-2 Omicron to antibody neutralization
Delphine Planas
,
Nell Saunders
,
Piet Maes
,
Florence Guivel-Benhassine
,
Cyril Planchais
et al.
Journal articles
pasteur-03654259v1
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Gotree/Goalign: toolkit and Go API to facilitate the development of phylogenetic workflows
Frédéric Lemoine
,
Olivier Gascuel
Journal articles
pasteur-03427582v1
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COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM
Frédéric Lemoine
,
Luc Blassel
,
Jakub Voznica
,
Olivier Gascuel
Journal articles
pasteur-02995703v1
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Genomic Epidemiology of 2015–2016 Zika Virus Outbreak in Cape Verde
Oumar Faye
,
Maria de Lourdes Monteiro
,
Bram Vrancken
,
Matthieu Prot
,
Sebastian Lequime
et al.
Journal articles
pasteur-02862296v1
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SpliceLauncher: a tool for detection, annotation and relative quantification of alternative junctions from RNAseq data
Raphaël Leman
,
Valentin Harter
,
Alexandre Atkinson
,
Grégoire Davy
,
Antoine Rousselin
et al.
Journal articles
pasteur-02862337v1
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NGPhylogeny.fr: new generation phylogenetic services for non-specialists
Frédéric Lemoine
,
Damien Correia
,
Vincent Lefort
,
Olivia Doppelt-Azeroual
,
Fabien Mareuil
et al.
Journal articles
hal-02341225v1
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Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data.
Frederic Lemoine
,
Olivier Lespinet
,
Bernard Labedan
Journal articles
hal-00194466v1
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The multiple facets of homology and their use in comparative genomics to study the evolution of genes, genomes, and species.
Stéphane Descorps-Declère
,
Frédéric Lemoine
,
Quentin Sculo
,
Olivier Lespinet
,
Bernard Labedan
et al.
Journal articles
istex
hal-00195158v1
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Amplicon rearrangements during the extrachromosomal and intrachromosomal amplification process in a glioma
Nicolas Vogt
,
Anne Gibaud
,
Fréderic Lemoine
,
Pierre de La Grange
,
Michelle Debatisse
et al.
Journal articles
hal-01332776v1
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Deep learning from phylogenies to uncover the transmission dynamics of epidemics
J Voznica
,
Anna Zhukova
,
V Boskova
,
E Saulnier
,
Fréderic Lemoine
et al.
2021
Preprints, Working Papers, ...
hal-03428718v1
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Renewing Felsenstein’s phylogenetic bootstrap in the era of big data
Fréderic Lemoine
,
Jean-Baka Domelevo Entfellner
,
Eduan K. Wilkinson
,
Damien Correia
,
Miraine Dávila Felipe
et al.
Journal articles
lirmm-02078445v1
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Molecular analyses of juvenile granulosa cell tumors bearing AKT1 mutations provide insights into tumor biology and therapeutic leads.
Aurélie Auguste
,
Laurianne Bessière
,
Anne-Laure Todeschini
,
Sandrine Caburet
,
Sabine Sarnacki
et al.
Journal articles
hal-01266741v1
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Sensitive Detection of Site-wise Convergent Evolution in Large Protein Alignments with ConDor
Marie Morel
,
Frédéric Lemoine
,
Olivier Gascuel
2021
Preprints, Working Papers, ...
hal-03428682v1
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Lipocalin 2, the TNF-like receptor TWEAKR and its ligand TWEAK act downstream of NFAT1 to regulate breast cancer cell invasion.
Benoît Gaudineau
,
Marjorie Fougère
,
Frédéric Guaddachi
,
Frédéric Lemoine
,
Pierre de La Grange
et al.
Journal articles
inserm-00715876v1
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Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems
Marine Djaffardjy
,
George Marchment
,
Clémence Sebe
,
Raphael Blanchet
,
Khalid Bellajhame
et al.
Journal articles
hal-04037221v1
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