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authIdHal_s : lemoine-frederic

Deep learning from phylogenies to understand the dynamics of epidemics

Jakub Voznica , Anna Zhukova , Tristan Dot , Kary Ocaña , Frédéric Lemoine et al.
Epidemics - 7th International Conference on Infectious Disease Dynamics, Dec 2019, Charleston, United States
Conference papers pasteur-02405720v1
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Distribution and asymptotic behavior of the phylogenetic transfer distance

Miraine Dávila Felipe , Jean-Baka Domelevo Entfellner , Frédéric Lemoine , Jakub Truszkowski , Olivier Gascuel et al.
Journal of Mathematical Biology, 2019, 79 (2), pp.485-508. ⟨10.1007/s00285-019-01365-0⟩
Journal articles pasteur-02404376v1
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Deciphering RNA G-quadruplex function during the early steps of HIV-1 infection

Samir Amrane , Chloé Jaubert , Amina Bedrat , Tiffany Rundstadler , Patricia Recordon-Pinson et al.
Nucleic Acids Research, 2022, 50 (21), pp.12328-12343. ⟨10.1093/nar/gkac1030⟩
Journal articles hal-03874577v1
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Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

Sarah Cohen-Boulakia , Khalid Belhajjame , Olivier Collin , Jérôme Chopard , Christine Froidevaux et al.
Future Generation Computer Systems, 2017, 75, pp.284-298. ⟨10.1016/j.future.2017.01.012⟩
Journal articles hal-01516082v1
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Origin, evolution and global spread of SARS-CoV-2

Anna Zhukova , Luc Blassel , Frédéric Lemoine , Marie Morel , Jakub Voznica et al.
Comptes Rendus Biologies, 2021, pp.1-19. ⟨10.5802/crbiol.29⟩
Journal articles pasteur-03038752v1
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A new route for integron cassette dissemination among bacterial genomes

Céline Loot , Gael A Millot , Egill Richard , Claire Vit , Baptiste Darracq et al.
Preprints, Working Papers, ... pasteur-03826688v1

Identification of novel recurrent ETV6-IgH fusions in primary central nervous system lymphoma

Aurélie Bruno , Karim Labreche , Mailys Daniau , Blandine Boisselier , Guillaume Gauchotte et al.
Neuro-Oncology, 2018, 20 (8), pp.1092-1100. ⟨10.1093/neuonc/noy019⟩
Journal articles pasteur-02862388v1
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J. Voznica , A. Zhukova , V. Boskova , E. Saulnier , F. Lemoine et al.
Nature Communications, 2022, 13 (1), pp.3896. ⟨10.1038/s41467-022-31511-0⟩
Journal articles hal-03861407v1

SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes.

Frederic Lemoine , Bernard Labedan , Olivier Lespinet
BMC Bioinformatics, 2008, 9 (1), pp.536. ⟨10.1186/1471-2105-9-536⟩
Journal articles hal-00354657v1

GenoQuery: a new querying module for functional annotation in a genomic warehouse.

Frédéric Lemoine , Bernard Labedan , Christine Froidevaux
Bioinformatics, 2008, 24 (13), pp.i322-9. ⟨10.1093/bioinformatics/btn159⟩
Journal articles hal-00297225v1

Considerable escape of SARS-CoV-2 Omicron to antibody neutralization

Delphine Planas , Nell Saunders , Piet Maes , Florence Guivel-Benhassine , Cyril Planchais et al.
Nature, 2022, 602 (7898), pp.671-675. ⟨10.1038/s41586-021-04389-z⟩
Journal articles pasteur-03654259v1
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Gotree/Goalign: toolkit and Go API to facilitate the development of phylogenetic workflows

Frédéric Lemoine , Olivier Gascuel
NAR Genomics and Bioinformatics, 2021, 3 (3), pp.lqab075. ⟨10.1093/nargab/lqab075⟩
Journal articles pasteur-03427582v1
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COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM

Frédéric Lemoine , Luc Blassel , Jakub Voznica , Olivier Gascuel
Bioinformatics, 2021, pp.btaa871. ⟨10.1093/bioinformatics/btaa871⟩
Journal articles pasteur-02995703v1
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Genomic Epidemiology of 2015–2016 Zika Virus Outbreak in Cape Verde

Oumar Faye , Maria de Lourdes Monteiro , Bram Vrancken , Matthieu Prot , Sebastian Lequime et al.
Emerging Infectious Diseases, 2020, 26 (6), pp.1084-1090. ⟨10.3201/eid2606.190928⟩
Journal articles pasteur-02862296v1

SpliceLauncher: a tool for detection, annotation and relative quantification of alternative junctions from RNAseq data

Raphaël Leman , Valentin Harter , Alexandre Atkinson , Grégoire Davy , Antoine Rousselin et al.
Bioinformatics, 2019, 36 (5), pp.1634-1636. ⟨10.1093/bioinformatics/btz784⟩
Journal articles pasteur-02862337v1
Image document new generation phylogenetic services for non-specialists

Frédéric Lemoine , Damien Correia , Vincent Lefort , Olivia Doppelt-Azeroual , Fabien Mareuil et al.
Nucleic Acids Research, 2019, 47 (W1), pp.W260-W265. ⟨10.1093/nar/gkz303⟩
Journal articles hal-02341225v1

Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data.

Frederic Lemoine , Olivier Lespinet , Bernard Labedan
BMC Evolutionary Biology, 2007, 7 (1), pp.237. ⟨10.1186/1471-2148-7-237⟩
Journal articles hal-00194466v1

The multiple facets of homology and their use in comparative genomics to study the evolution of genes, genomes, and species.

Stéphane Descorps-Declère , Frédéric Lemoine , Quentin Sculo , Olivier Lespinet , Bernard Labedan et al.
Biochimie, 2007, epub ahead of print. ⟨10.1016/j.biochi.2007.09.010⟩
Journal articles istex hal-00195158v1
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Amplicon rearrangements during the extrachromosomal and intrachromosomal amplification process in a glioma

Nicolas Vogt , Anne Gibaud , Fréderic Lemoine , Pierre de La Grange , Michelle Debatisse et al.
Nucleic Acids Research, 2014, 42 (21), pp.13194-13205. ⟨10.1093/nar/gku1101⟩
Journal articles hal-01332776v1
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Deep learning from phylogenies to uncover the transmission dynamics of epidemics

J Voznica , Anna Zhukova , V Boskova , E Saulnier , Fréderic Lemoine et al.
Preprints, Working Papers, ... hal-03428718v1
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Renewing Felsenstein’s phylogenetic bootstrap in the era of big data

Fréderic Lemoine , Jean-Baka Domelevo Entfellner , Eduan K. Wilkinson , Damien Correia , Miraine Dávila Felipe et al.
Nature, 2018, 556 (7702), pp.452-456. ⟨10.1038/s41586-018-0043-0⟩
Journal articles lirmm-02078445v1

Molecular analyses of juvenile granulosa cell tumors bearing AKT1 mutations provide insights into tumor biology and therapeutic leads.

Aurélie Auguste , Laurianne Bessière , Anne-Laure Todeschini , Sandrine Caburet , Sabine Sarnacki et al.
Human Molecular Genetics, 2015, 24 (23), pp.6687-98. ⟨10.1093/hmg/ddv373⟩
Journal articles hal-01266741v1
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Sensitive Detection of Site-wise Convergent Evolution in Large Protein Alignments with ConDor

Marie Morel , Frédéric Lemoine , Olivier Gascuel
Preprints, Working Papers, ... hal-03428682v1
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Lipocalin 2, the TNF-like receptor TWEAKR and its ligand TWEAK act downstream of NFAT1 to regulate breast cancer cell invasion.

Benoît Gaudineau , Marjorie Fougère , Frédéric Guaddachi , Frédéric Lemoine , Pierre de La Grange et al.
Journal of Cell Science, 2012, 125 (Pt 19), pp.4475-86. ⟨10.1242/jcs.099879⟩
Journal articles inserm-00715876v1
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Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems

Marine Djaffardjy , George Marchment , Clémence Sebe , Raphael Blanchet , Khalid Bellajhame et al.
Computational and Structural Biotechnology Journal, 2023, 21, pp.2075-2085. ⟨10.1016/j.csbj.2023.03.003⟩
Journal articles hal-04037221v1