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authIdHal_s : mathieu-gautier-1976
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REHH 2.0: a reimplementation of the R package REHH to detect positive selection from haplotype structure

Mathieu Gautier , Alexander Klassmann , Renaud Vitalis
Molecular Ecology Resources, 2017, 17 (1), pp.78-90. ⟨10.1111/1755-0998.12634⟩
Journal articles hal-01607599v1
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The genomic basis of colour pattern polymorphism in the harlequin ladybird

Mathieu Gautier , Junichi Yamaguchi , Julien Foucaud , Anne Loiseau , Aurélien Ausset et al.
2020
Preprints, Working Papers, ... hal-02791082v1
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Private Selective Sweeps Identified from Next-Generation Pool-Sequencing Reveal Convergent Pathways under Selection in Two Inbred Schistosoma mansoni Strains.

Julie a J Clément , Eve Toulza , Mathieu Gautier , Hugues Parrinello , David Roquis et al.
PLoS Neglected Tropical Diseases, 2013, 7 (12), pp.e2591. ⟨10.1371/journal.pntd.0002591⟩
Journal articles hal-00938922v1
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The worldwide invasion of Drosophila suzukii is accompanied by a large increase of transposable element load and a small number of putatively adaptive insertions

Vincent Mérel , Patricia Gibert , Inessa Buch , Valentina Rodriguez Rada , Arnaud Estoup et al.
Molecular Biology and Evolution, 2021, 38 (10), pp.4252-4267. ⟨10.1093/molbev/msab155⟩
Journal articles hal-03015267v2
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Near-chromosome level genome assembly of the fruit pest Drosophila suzukii using long-read sequencing

Mathilde Paris , Roxane Boyer , Rita Jaenichen , Jochen Wolf , Marianthi Karageorgi et al.
Scientific Reports, 2020, 10 (1), pp.11227. ⟨10.1038/s41598-020-67373-z⟩
Journal articles hal-02908174v1

Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping.

Mathieu Gautier , Julien Foucaud , Karim Gharbi , Timothée Cézard , Maxime Galan et al.
Molecular Ecology, 2013, 22 (14), pp.3766-79. ⟨10.1111/mec.12360⟩
Journal articles istex hal-00860608v1

Initial French experience of percutaneous mitral valve repair with the MitraClip: A multicentre national registry

Xavier Armoiry , Eric Brochet , Thierry Lefevre , Patrice Guerin , Nicolas Dumonteil et al.
Archives of cardiovascular diseases, 2013, 106 (5), pp.287-294. ⟨10.1016/j.acvd.2013.03.059⟩
Journal articles hal-01814471v1
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Empirical assessment of RAD sequencing for interspecific phylogeny

Astrid Cruaud , Mathieu M. Gautier , Maxime Galan , Julien Foucaud , Laure Sauné et al.
Molecular Biology and Evolution, 2014, 31 (5), pp.1272-1274. ⟨10.1093/molbev/msu063⟩
Journal articles hal-02638415v1
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A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird

Yann X. C. Bourgeois , Boris Delahaie , Mathieu Gautier , Emeline Lhuillier , Pierre-Jean G. Malé et al.
Royal Society Open Science, 2017, 4 (2), Non paginé. ⟨10.1098/rsos.160805⟩
Journal articles hal-01603958v1
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Exploring systematic biases, rooting methods and morphological evidence to unravel the evolutionary history of the genus Ficus (Moraceae)

Jean-Yves Rasplus , Lillian Jennifer Rodriguez , Laure Sauné , Yang-Qiong Peng , Anthony Bain et al.
Cladistics, 2021, 37 (4), pp.402-422. ⟨10.1101/2020.04.15.042259⟩
Journal articles hal-03051462v1
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A whole-genome scan for association with invasion success in the fruit fly Drosophila suzukii using contrasts of allele frequencies corrected for population structure

Laure Olazcuaga , Anne Loiseau , Hugues Parrinello , Mathilde Paris , Antoine Fraimout et al.
Molecular Biology and Evolution, 2020, 37 (8), pp.2369-2385. ⟨10.1093/molbev/msaa098⟩
Journal articles hal-02563272v1

Phenotypic measurements and study of the polymorphism of candidate genes for the fertility QTL of chromosome 3 in the Prim'holstein breed

P. Humblot , Mathieu M. Gautier , Tom T. Druet , Yves Amigues , Bénédicte Grimard et al.
du séminaire AgenaeGenanimal, 15-16 octobre 2007, Oct 2007, Dourdan
Conference papers hal-02750987v1

Comment la coccinelle arlequin dessine-t-elle ses points rouges ou ses points noirs ?

Arnaud A Estoup , Mathieu Gautier , B. Prud’homme
2018, 1 p
Other publications hal-02789608v1
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The evolution and population diversity of bison in pleistocene and holocene eurasia: sex matters

Thierry Grange , Jean-Philip Brugal , Laurence Flori , Mathieu Gautier , Antigone Uzunidis et al.
Diversity, 2018, 10 (3), 25 p. ⟨10.3390/d10030065⟩
Journal articles hal-01974602v1

Rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

Mathieu M. Gautier , Renaud Vitalis
Bioinformatics, 2012, 28 (2), pp.1176-1177. ⟨10.1093/bioinformatics/bts115⟩
Journal articles hal-02648143v1

Identification by R-banding and FISH of chromosome arms involved in Robertsonian translocations in several deer species

Amélie Bonnet-Garnier , F. Claro , S. Thevenon , Mathieu M. Gautier , Hélène Hayes et al.
Chromosome Research, 2003, 11, pp.649-663. ⟨10.1023/A:1025981508867⟩
Journal articles istex hal-02682511v1

Fertilité : déterminisme génétique et étude métabolique des problèmes de fertilité des vaches laitières hautes productrices

Joëlle Dupont , Lucie Tosca , Philippe Monget , Mathieu M. Gautier , Andre A. Eggen et al.
Séminaire AGENAE : Analyse du Genome des Animaux d'Elevage, Mar 2006, Poitiers, France. pp.40-41
Conference papers hal-02812888v1

A model-based approach to characterize individual inbreeding at both global and local genomic scales

T. Druet , Mathieu Gautier
Molecular Ecology, 2017, 26 (20), accepté. ⟨10.1111/mec.14324⟩
Journal articles hal-01605680v1
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Deciphering the Wisent Demographic and Adaptive Histories from Individual Whole-Genome Sequences

Mathieu Gautier , Katayoun Moazami-Goudarzi , Hubert H. Levéziel , Hugues Parrinello , Cécile Grohs et al.
Molecular Biology and Evolution, 2016, 33 (11), pp.2801-2814. ⟨10.1093/molbev/msw144⟩
Journal articles hal-02506852v1
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Divergence of olfactory receptors associated with the evolution of assortative mating and reproductive isolation in mice

Carole M Smadja , Etienne Loire , Pierre Caminade , Dany Severac , Mathieu Gautier et al.
2022
Preprints, Working Papers, ... hal-03864612v1

La recette génétique des pois rouges ou noirs de la coccinelle

Arnaud A Estoup , Mathieu Gautier , B. Prud’homme
2018, 1 p
Other publications hal-02786767v1
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FLPCA: A Fused Lasso PCA-based approach to identify influential markers in differentiated populations from dense SNP data

Denis Laloë , Julien Chiquet , Florence Jaffrezic , Mathieu M. Gautier
International Biometric Conference, Jul 2014, Firenze, Italy
Conference papers hal-02798952v1

Du génotype au phénotype : les motifs des coccinelles arlequins

Mathieu Gautier , Benjamin Prud’homme , Junichi Yamaguchi , Arnaud A Estoup
Ressources en sciences de la vie pour les enseignants, 2018
Scientific blog post hal-02787178v1
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Inferring Population Histories Using Genome-Wide Allele Frequency Data

Mathieu Gautier , Renaud Vitalis
Molecular Biology and Evolution, 2012, 30 (3), pp.654-668. ⟨10.1093/molbev/mss257⟩
Journal articles hal-00783026v1
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Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia

Laure Ségurel , Frédéric Austerlitz , Bruno Toupance , Mathieu M. Gautier , Joanna L Kelley et al.
European Journal of Human Genetics, 2013, 21 (10), pp.1146-1151. ⟨10.1038/ejhg.2012.295⟩
Journal articles hal-02120826v1
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Inferring sex-specific demographic history from SNP data

Florian Clemente , Mathieu Gautier , Renaud Vitalis
PLoS Genetics, 2018, 14 (1), ⟨10.1371/journal.pgen.1007191⟩
Journal articles hal-02388049v1

Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races

Pierre Nouhaud , Mathieu Gautier , Anaïs Gouin , Julie Jaquiéry , Jean Peccoud et al.
Molecular Ecology, 2018, 27 (16), pp.3287 - 3300. ⟨10.1111/mec.14799⟩
Journal articles hal-01892027v1

Atypical structure and phylogenomic evolution of the new eutherian oocyte- and embryo-expressed KHDC1/DPPA5/ECAT1/OOEP gene family

Alice Pierre , Mathieu M. Gautier , I. Callebaut , Martine Bontoux , Eric Jeanpierre et al.
Genomics, 2007, 90 (5), pp.583-594
Journal articles hal-02666732v1
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C-Nap1 mutation affects centriole cohesion and is associated with a Seckel-like syndrome in cattle

Sandrine Floriot , Christine Vesque , Sabrina Rodriguez , Florence Bourgain-Guglielmetti , Anthi Karaiskou et al.
Nature Communications, 2015, 6, pp.1-9. ⟨10.1038/ncomms7894⟩
Journal articles hal-01194104v1

Large-scale candidate gene scan reveals the role of chemoreceptor genes in host plant specialization and speciation in the pea aphid

Carole Smadja , Björn Canbäck , Renaud Vitalis , Mathieu Gautier , Julia Ferrari et al.
Evolution - International Journal of Organic Evolution, 2012, 66 (9), pp.2723 - 2738. ⟨10.1111/j.1558-5646.2012.01612.x⟩
Journal articles hal-02652662v1