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Combinatorics of Distance-Based Tree Inference
Fabio Pardi
,
Olivier Gascuel
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (41), pp.16443-16448. ⟨10.1073/pnas.1118368109⟩
Journal articles
lirmm-00726361v2
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The seventh pandemic of cholera in Europe revisited by microbial genomics
Mihaela Oprea
,
Elisabeth Njamkepo
,
Daniela Cristea
,
Anna Zhukova
,
Clifford Clark
et al.
Journal articles
pasteur-03036907v1
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Reconstructing the Duplication History of Tandemly Repeated Sequences
Olivier Gascuel
,
Denis Bertrand
,
O. Elemento
O. Gascuel. Mathematics of Evolution and Phylogeny, Oxford University Press, pp.205-235, 2005, 0-19-856610-7
Book sections
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Computational discovery of regulatory elements in a continuous expression space
Mathieu Lajoie
,
Olivier Gascuel
,
Vincent Lefort
,
Laurent Brehelin
Journal articles
lirmm-00796453v1
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Fast Dating Using Least-Squares Criteria and Algorithms
Thu-Hien To
,
Matthieu Jung
,
Samantha Lycett
,
Olivier Gascuel
Journal articles
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Phylogeny Reconstruction Methods
Olivier Gascuel
ISCB Africa ASBCB Conference on Bioinformatics, Mar 2013, Casablanca, Morocco
Conference papers
lirmm-01397607v1
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Phylogeny Reconstruction Methods
Olivier Gascuel
Bioinformatics in the Tropics, Sep 2013, Durban, South Africa
Conference papers
lirmm-01397573v1
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Fast Dating using Least Squares
Olivier Gascuel
Mathematical Models for Epidemiology and Phylogenetics, May 2016, Lille, France
Conference papers
lirmm-01397427v1
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Models and Algorithms in Phylogenetics
Olivier Gascuel
Molecular Phylogenies Courses, Dec 2014, Hanoi, Vietnam
Conference papers
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Concomitant emergence of the antisense protein gene of HIV-1 and of the pandemic
Elodie Cassan
,
Anne-Muriel Arigon Chifolleau
,
Jean-Michel Mesnard
,
Antoine Gross
,
Olivier Gascuel
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (41), pp.11537-11542. ⟨10.1073/pnas.1605739113⟩
Journal articles
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Mathematics of Evolution and Phylogeny
Olivier Gascuel
Oxford University Press, pp.416, 2004
Books
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BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
Olivier Gascuel
Journal articles
lirmm-00730410v1
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The dream of Darwin: reconstructing evolution from DNA
Olivier Gascuel
13th Aykut Kence Evolution Conference, Feb 2019, Ankara, Turkey
Conference papers
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Numerical Optimization Techniques in Maximum Likelihood Tree Inference
Stéphane Guindon
,
Olivier Gascuel
Tandy Warnow. Bioinformatics and Phylogenetics: Seminal Contributions of Bernard Moret, 29, Springer, pp.21-38, 2019, Computational Biology (COBO), 978-3-030-10837-3. ⟨10.1007/978-3-030-10837-3_2⟩
Book sections
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Accounting for exposition and secondary structure in protein evolution: models and gains
Quang Le Si
,
Olivier Gascuel
The Annual New Zealand Phylogenetics Meeting, Feb 2007, Mount Ruapehu, New Zealand, New Zealand
Conference papers
lirmm-00195966v1
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Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle
Richard Desper
,
Olivier Gascuel
Conference papers
lirmm-00269513v1
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Using Repeated Measurements to Validate Hierarchical Gene Clusters
Laurent Brehelin
,
Olivier Gascuel
,
Olivier C. Martin
Journal articles
lirmm-00272116v1
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On the consistency of the minimum evolution principle of phylogenetic inference
François Denis
,
Olivier Gascuel
Journal articles
lirmm-00269579v1
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Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
Carla Mavian
,
Sergei Kosakovsky Pond
,
Simone Marini
,
Brittany Rife Magalis
,
Anne-Mieke Vandamme
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (23), pp.12522-12523. ⟨10.1073/pnas.2007295117⟩
Journal articles
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Drug resistance mutations in HIV: new bioinformatics approaches and challenges
Luc Blassel
,
Anna Zhukova
,
Christian J Villabona-Arenas
,
Katherine E Atkins
,
Stéphane Hué
et al.
Journal articles
hal-03369954v1
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A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK
Raphaël Mourad
,
François Chevennet
,
David T. Dunn
,
Esther Fearnhill
,
Valerie Delpech
et al.
Journal articles
lirmm-01348643v1
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Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection
Amel Ghouila
,
Isabelle Florent
,
Fatma Zahra Guerfali
,
Nicolas Terrapon
,
Dhafer Laouini
et al.
Journal articles
pasteur-01060276v1
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NGPhylogeny.fr: new generation phylogenetic services for non-specialists
Frédéric Lemoine
,
Damien Correia
,
Vincent Lefort
,
Olivia Doppelt-Azeroual
,
Fabien Mareuil
et al.
Journal articles
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An Exact and Polynomial Distance-Based Algorithm to Reconstruct Single Copy Tandem Duplication Trees
O. Elemento
,
Olivier Gascuel
Journal articles
lirmm-00105291v1
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Inferring epidemiological parameters from phylogenies using regression-ABC: a comparative study
Emma Saulnier
,
Olivier Gascuel
,
Samuel Alizon
Journal articles
hal-01567904v1
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Robustness of Phylogenetic Inference Based on Minimum Evolution
Fabio Pardi
,
Sylvain Guillemot
,
Olivier Gascuel
Journal articles
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Improving Amino-Acid Substitution Modelling
Olivier Gascuel
Computational Phylogenetics and Molecular Systematics, Nov 2007, Russia
Conference papers
lirmm-00193167v1
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The Role of Phylogenetics as a Tool to Predict the Spread of Resistance
Anna Zhukova
,
Teresa Cutino-Moguel
,
Olivier Gascuel
,
Deenan K Pillay
Journal articles
lirmm-02078446v1
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Fast dating using least squares
Olivier Gascuel
SMBE: Society for Molecular Biology and Evolution, Jul 2015, Vienna, Austria
Conference papers
lirmm-01397443v1
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A simple method to predict protein binding from aligned sequences - application to MHC superfamily and beta2-microglobulin
Elodie Duprat
,
Marie-Paule Lefranc
,
Olivier Gascuel
Journal articles
lirmm-00136659v1
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