Search - Archive ouverte HAL Access content directly

Filter your results

15 Results
authIdHal_s : thomas-denecker
Image document

Omics analyses, how to navigate through a constant data deluge

Thomas Denecker , Gaëlle Lelandais
2021
Preprints, Working Papers, ... hal-03429581v1
Image document

Pixel: a content management platform for quantitative omics data

Thomas Denecker , William Durand , Julien Maupetit , Charles Hébert , Jean-Michel Camadro et al.
PeerJ, 2019, 7, pp.e6623. ⟨10.7717/peerj.6623⟩
Journal articles hal-03100146v1
Image document

Bioinformatique et analyse de données multiomiques : principes et applications chez les levures pathogènes Candida glabrata et Candida albicans

Thomas Denecker
Bio-Informatique, Biologie Systémique [q-bio.QM]. Université Paris-Saclay, 2020. Français. ⟨NNT : 2020UPASL010⟩
Theses tel-02968518v1

Characterization of the replication timing program of 6 human model cell lines

Djihad Hadjadj , Thomas Denecker , Chrystelle Maric , Fabien Fauchereau , Giuseppe Baldacci et al.
Genomics Data, 2016, 9, pp.113 - 117. ⟨10.1016/j.gdata.2016.07.003⟩
Journal articles hal-01406426v1
Image document

Functional networks of co-expressed genes to explore iron homeostasis processes in the pathogenic yeast Candida glabrata

Thomas Denecker , Youfang Zhou Li , Cécile Fairhead , Karine Budin , Jean-Michel Camadro et al.
NAR Genomics and Bioinformatics, 2020, 2 (2), pp.lqaa027. ⟨10.1093/nargab/lqaa027⟩
Journal articles hal-03452211v1
Image document

The IFB e-Learning Working Group

Hélène Chiapello , Thomas Denecker , Gildas Le Corguillé , Pierre Poulain , Denis Puthier et al.
JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques) 2021, Jul 2021, Paris, France.
Conference poster hal-03296617v1
Image document

FAIR_bioinfo : a software perspective of reproducibility of bioinformatics analyses

Thomas Denecker , Céline Hernandez , Claire Toffano-Nioche
Journées Ouvertes de Biologie Informatique et Mathématiques - JOBIM 2020, Jun 2020, Montpellier, France
Conference poster hal-03071717v1
Image document

FAIR_Bioinfo: a turnkey training course and protocol for reproducible computational biology

Thomas Denecker , Claire Toffano-Nioche
JOSE - Journal of Open Source Education, 2021, ⟨10.21105/jose.00068⟩
Journal articles hal-02880655v2

A hypothesis-driven approach identifies CDK4 and CDK6 inhibitors as candidate drugs for treatments of adrenocortical carcinomas

Djihad Hadjadj , Su-Jung Kim , Thomas Denecker , Laura Ben Driss , Jean-Charles Cadoret et al.
Aging, 2017, 9 (12), pp.2695-2716. ⟨10.18632/aging.101356⟩
Journal articles hal-02363044v1

Empowering the detection of ChIP-seq "basic peaks" (bPeaks) in small eukaryotic genomes with a web user-interactive interface

Thomas Denecker , Gaëlle Lelandais
BMC Research Notes, 2018, 11 (1), pp.698. ⟨10.1186/s13104-018-3802-y⟩
Journal articles hal-02177599v1
Image document

Label-free quantitative proteomics in Candida yeast species: technical and biological replicates to assess data reproducibility

Gaëlle Lelandais , Thomas Denecker , Camille Garcia , Nicolas Danila , Thibaut Léger et al.
BMC Research Notes, 2019, 12 (1), pp.470. ⟨10.1186/s13104-019-4505-8⟩
Journal articles hal-02389332v1

Iron homeostasisis in C. glabrata at the transcriptomic level

Youfang Zhou-Li , Thomas Denecker , Karine Budin , Cécile Fairhead , Monique Bolotin Fukuhara et al.
20. Congress of the International Society for Human and Animal Mycology (ISHAM 2018), Jun 2018, Amsterdam, Netherlands. Oxford University Press, Medical Mycology, 56 (Suppl. 2), 230 p., 2018, Abstracts ISHAM 2018 - Supplement
Conference poster hal-02734714v1
Image document

Functional networks of co-expressed genes to explore iron homeostasis processes in the pathogenic yeast Candida glabrata

Thomas Denecker , Youfang Zhou li , Cécile Fairhead , Karine Budin , Jean-Michel Camadro et al.
NAR Genomics and Bioinformatics, 2020, 2 (2), ⟨10.1093/nargab/lqaa027⟩
Journal articles hal-03100086v1
Image document

Efficient, quick and easy-to-use DNA replication timing analysis with START-R suite

Djihad Hadjadj , Thomas Denecker , Eva Guérin , Su-Jung Kim , Fabien Fauchereau et al.
NAR Genomics and Bioinformatics, 2020, 2 (2), ⟨10.1093/nargab/lqaa045⟩
Journal articles hal-02929259v1

Science ouverte et principes FAIR dans un projet de bioinformatique

Thomas Denecker
Journée Science ouverte, Station Biologique de Roscoff, Mar 2023, Roscoff, France. ⟨10.5281/zenodo.7729199⟩
Conference papers hal-04027046v1