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Structure: Internal structure identifier : 1100627
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On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo

Charles-Elie Rabier , Vincent Berry , Jean-Christophe Glaszmann , Fabio Pardi , Celine Scornavacca et al.
JOBIM 2020 - 20e Journées Ouvertes de Biologie, Informatique et Mathématique, Jun 2020, Montpellier, France.
Conference poster lirmm-04027842v1
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Analyse des traces de consultations des ressources en ligne et de la réalisation des activité dans un module hybride en école d’ingénieur

Chrysta Pélissier , Vincent Berry , Jérôme Fortin
AIPU 2023 - 33e congrès de l'Association Internationale de Pédagogie Universitaire, Mar 2023, Perpignan, France
Conference papers lirmm-04027971v1
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Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates

Afif Elghraoui , Siavash Mirarab , Krister M. Swenson , Faramarz Valafar
Bioinformatics, 2023, 39 (1), pp.#btad024. ⟨10.1093/bioinformatics/btad024⟩
Journal articles hal-03875983v1
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FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

Lena M. Sauer , Rodrigo Cánovas , Daniel Barry Roche , Hosam Shams-Eldin , Patrice Ravel et al.
Malaria Journal, 2023, 22 (1), pp.27-46. ⟨10.1186/s12936-022-04430-0⟩
Journal articles lirmm-03962752v1
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Physical modeling of ribosomes along messenger RNA: estimating kinetic rates from ribosome profiling experiments with a ballistic model

Carole Chevalier , Jerome Dorignac , Yahaya Ibrahim , Armelle Choquet , Alexandre David et al.
2022
Preprints, Working Papers, ... hal-03832368v1
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Un siècle de réarrangements génomiques

Anne Bergeron , Krister M. Swenson
Gilles Didier (IMAG); Stéphane Guindon (LIRMM). Modèles et méthodes pour l’évolution biologique, Chapitre 5, ISTE, pp.127-150, 2022, 9781789480696. ⟨10.51926/ISTE.9069.ch5⟩
Book sections hal-03875891v1
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The multifaceted functions of the Fat mass and Obesity-associated protein (FTO) in normal and cancer cells

Sébastien Relier , Eric Rivals , Alexandre David
RNA Biology, 2022, 19 (1), pp.132-142. ⟨10.1080/15476286.2021.2016203⟩
Journal articles hal-03545725v1

RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes

Clément Agret , Annie Chateau , Gaetan Droc , Gautier Sarah , Manuel Ruiz et al.
Journal of Open Source Software, 2022, 7 (80), pp.4363. ⟨10.21105/joss.04363⟩
Journal articles lirmm-03920648v1
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Quantifying Hierarchical Conflicts in Homology Statements

Krister M. Swenson , Afif Elghraoui , Faramarz Valafar , Siavash Mirarab , Mathias Weller et al.
RECOMB-CG 2022 - 19th International Conference on Comparative Genomics, May 2022, La Jolla, CA, United States. pp.146-167, ⟨10.1007/978-3-031-06220-9_9⟩
Conference papers hal-03875727v1
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ShellOnYou : Learning by Doing Unix Command Line

Vincent Berry , Arnaud Castelltort , Chrysta Pélissier , Marion Rousseau , Chouki Tibermacine et al.
ITiCSE 2022 - 27th ACM Conference on on Innovation and Technology in Computer Science Education, Jul 2022, Dublin, Ireland. pp.379-385, ⟨10.1145/3502718.3524753⟩
Conference papers halshs-03726175v1

Modèles et méthodes pour l’évolution biologique

Gilles Didier , Stéphane Guindon
iSTE Edition, 330 p., 2022, 9781789480696
Books lirmm-03766511v1
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Computing Phylo-k-mers

Nikolai Romashchenko , Benjamin Linard , Fabio Pardi , Eric Rivals
2022
Preprints, Working Papers, ... lirmm-03778953v1
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Scripting Shell : configurer sa tablette Wacom en quelques heures

Alban Mancheron
GNU/Linux Magazine, 2022, Hors-Série, 117, pp.96-114
Journal articles lirmm-03655021v1
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Voyage initiatique vers la bioinformatique : la récompense est au bout du chemin

Alban Mancheron
GNU/Linux Magazine, 2022, 257, pp.44-59
Journal articles lirmm-03655025v1
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HT-smFISH: a cost effective and flexible workflow for high-throughput single molecule RNA imaging

Adham Safieddine , Emeline Coleno , Frederic Lionneton , Abdel-Meneem Traboulsi , Soha Salloum et al.
Nature Protocols, 2023, 18, pp.157-187. ⟨10.1038/s41596-022-00750-2⟩
Journal articles hal-03834928v1
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Quand collaborer répond à une « urgence » : l'atout d'une structuration Réseau

Marion Rousseau , Nora Cherifa Abid , Vincent Berry
AIPU 2022 - 32e congrès de l'Association Internationale de Pédagogie Universitaire, May 2022, Rennes, France
Conference papers lirmm-04028069v1
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Arbres : Combinatoire et Modèles

Gilles Didier , Stéphane Guindon
iSTE Edition. Modèles et méthodes pour l’évolution biologique, Chapitre 1, pp.7-32, 2022, 9781789480696. ⟨10.51926/ISTE.9069.ch1⟩
Book sections hal-03485566v1
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Éclairer les origines de la COVID-19 à partir de l’analyse comparée des génomes viraux

Stéphane Guindon , Celine Scornavacca
Interstices, 2022
Journal articles hal-03872208v1
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Alteration of ribosome function upon 5-fluorouracil treatment favors cancer cell drug-tolerance

Gabriel Therizols , Zeina Bash-Imam , Baptiste Panthu , Christelle Machon , Anne Vincent et al.
Nature Communications, 2022, 13 (1), pp.173-187. ⟨10.1038/s41467-021-27847-8⟩
Journal articles hal-03523177v1
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Physical Modeling of Translation with a Ballistic Model: Application to the Estimation of the Kinetic Parameters from Ribosome Sequencing Experiments

Carole Chevalier , Jerome Dorignac , Yahaya Ibrahim , Armelle Choquet , Alexandre David et al.
Annual Meeting of the International Physics of Living Systems (iPoLS) Network, May 2022, Montpellier, France
Conference poster hal-03691814v1
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Convergence of the number of period sets in strings

Eric Rivals , Michelle Sweering , Pengfei Wang
2022
Preprints, Working Papers, ... lirmm-03780386v1
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Multivariate Analysis of RNA Chemistry Marks Uncovers Epitranscriptomics-Based Biomarker Signature for Adult Diffuse Glioma Diagnostics

Sébastien Relier , Amandine Amalric , Aurore Attina , Izoudine Blaise Koumare , Valérie Rigau et al.
Analytical Chemistry, 2022, 94 (35), pp.11967-11972. ⟨10.1021/acs.analchem.2c01526⟩
Journal articles lirmm-03761119v1
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Systematic analysis of the genomic features involved in the binding preferences of transcription factors

Raphaël Romero , Christophe Menichelli , Jean-Michel Marin , Sophie Lèbre , Charles-Henri Lecellier et al.
2022
Preprints, Working Papers, ... hal-03796420v1
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Entre algorithmique et programmation

Alban Mancheron
GNU/Linux Magazine, 2022, 255, pp.6-22
Journal articles lirmm-03508634v1
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Mieux comprendre les conditions d’utilisation de services

Alban Mancheron
GNU/Linux Magazine, 2022, Hors-Série, 117, pp.8-11
Journal articles lirmm-03655012v1

Rate of coalescence of lineage pairs in the Spatial Λ -Fleming–Viot process

Johannes Wirtz , Stéphane Guindon
Theoretical Population Biology, 2022, 146, pp.15-28. ⟨10.1016/j.tpb.2022.05.002⟩
Journal articles lirmm-03875375v1
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On the Comparison of Bacteriophage Populations

Anne Bergeron , Marie-Jean Meurs , Romy Valiquette-Labonté , Krister M. Swenson
RECOMB-CG 2022 - 19th International Conference on Comparative Genomics, May 2022, La Jolla, CA, United States. pp.3-20, ⟨10.1007/978-3-031-06220-9_1⟩
Conference papers hal-03875827v1
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dipwmsearch: a python package for searching di-PWM motifs

Marie Mille , Julie Ripoll , Bastien Cazaux , Eric Rivals
2022
Preprints, Working Papers, ... lirmm-03834008v1