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Ascl1 Coordinately Regulates Gene Expression and the Chromatin Landscape during Neurogenesis

Alexandre a.S.F. Raposo , Francisca f. Vasconcelos , Daniela Drechsel , Corentine Marie , Caroline Johnston et al.
Cell Reports, 2015, 10 (9), pp.1544-1556. ⟨10.1016/j.celrep.2015.02.025⟩
Journal articles hal-01213854v1

Dynamically consistent reduction of logical regulatory graphs

Aurélien Naldi , Elisabeth Remy , Denis Thieffry , Claudine Chaouiya
Theoretical Computer Science, 2011, 412 (21), ⟨10.1016/j.tcs.2010.10.021⟩
Journal articles hal-01284743v1

Estimating Attractor Reachability in Asynchronous Logical Models

Nuno Mendes , Rui Henriques , Elisabeth Rémy , Jorge Carneiro , Pedro Monteiro et al.
Frontiers in Physiology, 2018, 9, pp.1161. ⟨10.3389/fphys.2018.01161⟩
Journal articles hal-02075322v1

EpiLog: A software for the logical modelling of epithelial dynamics

Pedro Varela , Camila Ramos , Pedro Monteiro , Claudine Chaouiya
F1000Research, 2018, 7, pp.1145. ⟨10.12688/f1000research.15613.2⟩
Journal articles hal-02564252v1
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Results of the Ontology Alignment Evaluation Initiative 2017

Manel Achichi , Michelle Cheatham , Zlatan Dragisic , Jérôme Euzenat , Daniel Faria et al.
OM: Ontology Matching, Oct 2017, Wien, Austria. pp.61-113
Conference papers hal-01670238v1
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Over-elongation of centrioles in cancer promotes centriole amplification and chromosome missegregation

Gaëlle Marteil , Adan Guerrero , André Vieira , Bernardo de Almeida , Pedro Machado et al.
Nature Communications, 2018, 9 (1), pp.1258. ⟨10.1038/s41467-018-03641-x⟩
Journal articles hal-01939139v1

Logical Modelling of Regulatory Networks, Methods and Applications

Claudine Chaouiya , Elisabeth Remy
Bulletin of Mathematical Biology, 2013, 75 (6), pp.891-5. ⟨10.1007/s11538-013-9863-0⟩
Journal articles hal-01282925v1
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Evolution of thorax architecture in ant castes highlights trade-off between flight and ground behaviors

Roberto A. Keller , Christian Peeters , Patrícia Beldade
eLife, 2014, 3, pp.e01539. ⟨10.7554/eLife.01539⟩
Journal articles hal-01316676v1
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Genomic analysis of European Drosophila melanogaster populations reveals longitudinal structure, continent-wide selection, and previously unknown DNA viruses

Martin Kapun , Maite G Barrón , Fabian Staubach , Darren J Obbard , R Axel W. Wiberg et al.
Molecular Biology and Evolution, 2020, 37 (9), pp.2661-2678. ⟨10.1093/molbev/msaa120⟩
Journal articles hal-03014405v1
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Did Our Species Evolve in Subdivided Populations across Africa, and Why Does It Matter?

Eleanor M L Scerri , Mark Thomas , Andrea Manica , Philipp Gunz , Jay T Stock et al.
Trends in Ecology and Evolution, 2018, 33 (8), pp.582-594. ⟨10.1016/j.tree.2018.05.005⟩
Journal articles hal-02347261v1

Pre-/post-otic rhombomeric interactions control the emergence of a fetal-like respiratory rhythm in the mouse embryo

Caroline Borday , Ana P. Coutinho , Isabelle Germon , Gilles Fortin , Jean Champagnat et al.
Journal of Neurobiology, 2006, 66 (12), pp.1285. ⟨10.1002/neu.20271⟩
Journal articles hal-02394528v1

Washable and Reusable Zr-Metal–Organic Framework Nanostructure/Polyacrylonitrile Fibrous Mats for Catalytic Degradation of Real Chemical Warfare Agents

Youngsang Ko , Eun Jin Bae , Sachin K Chitale , Carla Vieira Soares , Alexandre Leitão et al.
ACS Applied Nano Materials, 2022, 5 (7), pp.9657-9665. ⟨10.1021/acsanm.2c01895⟩
Journal articles hal-03752630v1
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Contact networks have small metric backbones that maintain community structure and are primary transmission subgraphs

Rion Brattig Correia , Alain Barrat , Luis M Rocha
PLoS Computational Biology, 2023, 19 (2), pp.e1010854. ⟨10.1371/journal.pcbi.1010854⟩
Journal articles hal-04003109v1
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Diverse Cis-Regulatory Mechanisms Contribute to Expression Evolution of Tandem Gene Duplicates

Luís Baudouin-Gonzalez , Marília A Santos , Camille Tempesta , Élio Sucena , Fernando Roch et al.
Molecular Biology and Evolution, 2017, 34 (12), pp.3132 - 3147. ⟨10.1093/molbev/msx237⟩
Journal articles hal-03851836v1
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Demographic inference using genetic data from a single individual: separating population size variation from population structure

Olivier Mazet , Willy Rodríguez , Lounès Chikhi
Theoretical Population Biology, 2015, 104, pp.46 - 58. ⟨10.1016/j.tpb.2015.06.003⟩
Journal articles hal-01087849v1

Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5

Rushad Pavri , Anna Gazumyan , Mila Jankovic , Michela Di Virgilio , Isaac Klein et al.
Cell , 2010, 143 (1), pp.122-133. ⟨10.1016/j.cell.2010.09.017⟩
Journal articles hal-04009060v1
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Impact of model assumptions on demographic inferences: the case study of two sympatric mouse lemurs in northwestern Madagascar

Helena Teixeira , Jordi Salmona , Armando Arredondo , Beatriz Mourato , Sophie Manzi et al.
BMC Ecology and Evolution, 2021, 21 (1), ⟨10.1186/s12862-021-01929-z⟩
Journal articles hal-03412689v1
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CDK1 Prevents Unscheduled PLK4-STIL Complex Assembly in Centriole Biogenesis

Sihem Zitouni , Maria~e. Francia , Filipe Leal , Susana Montenegro~gouveia , Catarina Nabais et al.
Current Biology - CB, 2016, 26 (9), pp.1127--1137. ⟨10.1016/j.cub.2016.03.055⟩
Journal articles hal-01878039v1
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Floccular fossa size is not a reliable proxy of ecology and behaviour in vertebrates

S. Ferreira-Cardoso , R. Araújo , N. Martins , G. Martins , S. Walsh et al.
Scientific Reports, 2017, 7 (1), pp.2005. ⟨10.1038/s41598-017-01981-0⟩
Journal articles hal-03079867v1

Spider mites escape bacterial infection by avoiding contaminated food

Flore Zélé , Gonçalo Santos-Matos , Alexandre R. T. Figueiredo , Cátia Eira , Catarina Pinto et al.
Oecologia, 2019, 189 (1), pp.111-122. ⟨10.1007/s00442-018-4316-y⟩
Journal articles hal-03399843v1

Human origins in Southern African palaeo-wetlands? Strong claims from weak evidence

Carina Schlebusch , Liisa Loog , Huw Groucutt , Turi King , Adam Rutherford et al.
Journal of Archaeological Science, 2021, 130, pp.105374. ⟨10.1016/j.jas.2021.105374⟩
Journal articles hal-03453704v1
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The fission yeast Stn1-Ten1 complex limits telomerase activity via its SUMO-interacting motif and promotes telomeres replication

Samah Matmati , Melina Vaurs , Jose Miguel Escandell , Laetitia Maestroni , Toru Nakamura et al.
Science Advances , 2018, 4 (5), pp.eaar2740. ⟨10.1126/SCIADV.AAR2740⟩
Journal articles hal-02438807v1
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Evidence of IL-17, IP-10, and IL-10 involvement in multiple-organ dysfunction and IL-17 pathway in acute renal failure associated to Plasmodium falciparum malaria.

Fabien Herbert , Nicolas Tchitchek , Devendra Bansal , Julien Jacques , Sulabha Pathak et al.
Journal of Translational Medicine, 2015, 13, pp.369. ⟨10.1186/s12967-015-0731-6⟩
Journal articles hal-02051283v1
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Ecology and morphology of mouse lemurs ( Microcebus spp.) in a hotspot of microendemism in northeastern Madagascar, with the description of a new species

Dominik Schüssler , Marina Blanco , Jordi Salmona , Jelmer Poelstra , Jean Andriambeloson et al.
American Journal of Primatology, 2020, 82 (9), pp.e23180. ⟨10.1002/ajp.23180⟩
Journal articles hal-03026869v1
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Un berceau à l'échelle du continent africain

Lounès Chikhi , Francesco D’errico
Other publications hal-03026890v1
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SBML Level 3: an extensible format for the exchange and reuse of biological models

Sarah Keating , Frank Bergmann , Tomáš Helikar , Rahuman Malik‐sheriff , Ion Moraru et al.
Molecular Systems Biology, 2020, 16 (8), pp.1-21. ⟨10.15252/msb.20199110⟩
Journal articles hal-02924909v1
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Composition and abstraction of logical regulatory modules: application to multicellular systems

Nuno D Mendes , Frédéric Lang , Yves-Stan Le Cornec , Radu Mateescu , Grégory Batt et al.
Bioinformatics, 2013, 29 (6), pp.749-757. ⟨10.1093/bioinformatics/btt033⟩
Journal articles hal-00785564v1

Within-host evolution and virulence in microparasites

Jean-Baptiste André , Bernard Godelle
Journal of Theoretical Biology, 2006, 241 (2), pp.402-409. ⟨10.1016/j.jtbi.2005.12.011⟩
Journal articles istex halsde-00339521v1
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Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling.

Aurélien Naldi , Jorge Carneiro , Claudine Chaouiya , Denis Thieffry
PLoS Computational Biology, 2010, 6 (9), pp.e1000912. ⟨10.1371/journal.pcbi.1000912⟩
Journal articles inserm-00704876v1
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ETV6-RUNX1 and RUNX1 directly regulate RAG1 expression: one more step in the understanding of childhood B-cell acute lymphoblastic leukemia leukemogenesis

Hélène Jakobczyk , Yan Jiang , Lydie Debaize , Benoit Soubise , Stéphane Avner et al.
Leukemia, 2022, 36 (2), pp.549-554. ⟨10.1038/s41375-021-01409-9⟩
Journal articles hal-03367380v1