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Exploring natural biodiversity to expand access to microbial terpene synthesis

Juan Rico , Katia Duquesne , Jean-Louis Petit , Aline Mariage , Ekaterina Darii et al.
Microbial Cell Factories, 2019, 18, pp.23. ⟨10.1186/s12934-019-1074-4⟩
Journal articles hal-02025505v1

Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data

Maxime Durot , François Le Fevre , Véronique de Berardinis , Annett Kreimeyer , David Vallenet et al.
BMC Systems Biology, 2008, 2 (1), pp.85. ⟨10.1186/1752-0509-2-85⟩
Journal articles hal-02503057v1
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Functional Diversity of Carbohydrate-Active Enzymes Enabling a Bacterium to Ferment Plant Biomass

Magali Boutard , Tristan Cerisy , Pierre-Yves Nogue , Adriana A. Alberti , Jean Weissenbach et al.
PLoS Genetics, 2014, pp.1004773. ⟨10.1371/journal.pgen.1004773⟩
Journal articles cea-01138771v1
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Insights into vertebrate whole-genome duplications from the rainbow trout genome

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard et al.
22. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE), Jun 2014, Puerto Rico, Puerto Rico. 2014, Smbe 2014. Molecular Evolution: From Genome Technology to the History of Life
Conference poster hal-01194063v1
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A Tribute to Disorder in the Genome of the Bloom- Forming Freshwater Cyanobacterium Microcystis aeruginosa

Jean-François Humbert , Valérie Barbe , Amel Latifi , Muriel Gugger , Alexandra Calteau et al.
PLoS ONE, 2013, 8 (8), pp.e70747. ⟨10.1371/journal.pone.0070747⟩
Journal articles bioemco-00851371v1
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Complete genome sequence of Crohn's disease-associated adherent-invasive E. coli strain LF82.

Sylvie Miquel , Eric Peyretaillade , Laurent Claret , Amélie de Vallée , Carole Dossat et al.
PLoS ONE, 2010, 5 (9), epub ahead of print. ⟨10.1371/journal.pone.0012714⟩
Journal articles hal-00529639v1
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The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

Isabelle Lesur , Grégoire G. Le Provost , Pascal Bento , Corinne da Silva , Jean-Charles Leplé et al.
BMC Genomics, 2015, 16 (1), pp.112. ⟨10.1186/s12864-015-1331-9⟩
Journal articles hal-02285504v1

Evolutionary history and genetic parallelism affect correlated responses to evolution.

Mickael Le Gac , Tim F Cooper , Stéphane Cruveiller , Claudine Médigue , Dominique Schneider et al.
Molecular Ecology, 2013, 22 (12), pp.3292-3303
Journal articles hal-00961479v1

Atlas of gene expression in the mouse kidney: new features of glomerular parietal cells

Lydie L Cheval , Fabien Pierrat , Carole Dossat , Mathieu Genete , Martine Imbert-Teboul et al.
Physiological Genomics, 2011, 43 (3), pp.161-173. ⟨10.1152/physiolgenomics.00093.2010⟩
Journal articles hal-03160960v1

Legumes Symbioses: Absence of Nod Genes in Photosynthetic Bradyrhizobia

Eric Giraud , Lionel Moulin , David Vallenet , Valérie Barbe , Eddie Cytryn et al.
Science, 2007, 316, pp.1307 - 1312. ⟨10.1126/science.1139548⟩
Journal articles halsde-00151340v1
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Genetic Analysis of Citrobacter sp.86 Reveals Involvement of Corrinoids in Chlordecone and Lindane Biotransformations

Agnès Barbance , Oriane Della-Negra , Sébastien Chaussonnerie , Valérie Delmas , Delphine Muselet et al.
Frontiers in Microbiology, 2020, 11, pp.590061. ⟨10.3389/fmicb.2020.590061⟩
Journal articles hal-02998518v1
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Metatranscriptomics of cheese microbial communities: Efficiency of RNA extraction from various cheese types and of mRNA enrichment

Christophe Monnet , Célia Carbonne , Karine Labadie , Corinne Cruaud , Elodie Brun et al.
International Journal of Food Microbiology, 2022, pp.109701. ⟨10.1016/j.ijfoodmicro.2022.109701⟩
Journal articles hal-03664187v1

MR diffusion-based inference of a fiber bundle model from a population of subjects.

V. El Kouby , Y. Cointepas , C. Poupon , D. Rivière , N. Golestani et al.
Medical image computing and computer-assisted intervention : MICCAI .. International Conference on Medical Image Computing and Computer-Assisted Intervention, 2005, 8 (Pt 1), pp.196-204
Journal articles hal-00349662v1

Revealing the hidden functional diversity of an enzyme family

Karine Bastard , Adam Alexander Thil Smith , Carine Vergne-Vaxelaire , Alain Perret , Anne Zaparucha et al.
Nature Chemical Biology, 2014, 10 (1), pp.42-49. ⟨10.1038/nchembio.1387⟩
Journal articles hal-02504067v1

A vesicular glutamate transporter in lampreys: cDNA cloning and early expression in the nervous system.

Verona Villar-Cerviño , Claire Rocancourt , Arnaud Menuet , Corinne da Silva , Patrick Wincker et al.
Journal of Chemical Neuroanatomy, 2010, 40 (1), pp.71-81. ⟨10.1016/j.jchemneu.2010.03.009⟩
Journal articles hal-00486376v1
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Transcriptomics of Actinorhizal Symbioses Reveals Homologs of the Whole Common Symbiotic Signaling Cascade

Valerie Hocher , Nicole Alloisio , Florence Auguy , Pascale Fournier , Patrick Doumas et al.
Plant Physiology, 2011, 156 (2), pp.700-711. ⟨10.1104/pp.111.174151⟩
Journal articles hal-00599363v1
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Comparative genomics between two Xenorhabdus bovienii strains highlights differential evolutionary scenarios within an entomopathogenic bacterial species

Gaelle Bisch , Jean-Claude Ogier , Claudine Médigue , Zoé Rouy , Stéphanie Vincent et al.
Genome Biology and Evolution, 2016, 8 (1), pp.148-160. ⟨10.1093/gbe/evv248⟩
Journal articles hal-01837293v1
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Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium

Albin Teulet , Djamel Gully , Zoe Rouy , Alicia Camuel , Ralf Koebnik et al.
Microbial Genomics, 2020, 6 (9), ⟨10.1099/mgen.0.000407⟩
Journal articles hal-03127250v1
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Tuning of the enzyme ratio in a neutral redox convergent cascade: A key approach for an efficient one‐pot/two‐step biocatalytic whole‐cell system

Sidiky Ménil , Jean-Louis Petit , Elise Courvoisier-Dezord , Adrien Debard , Virginie Pellouin et al.
Biotechnology and Bioengineering, 2019, 116 (11), pp.2852-2863. ⟨10.1002/bit.27133⟩
Journal articles hal-03064469v1

A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes

Anestis Gkanogiannis , Stéphane Gazut , Marcel Salanoubat , Sawsan Kanj , Thomas Brüls et al.
BMC Bioinformatics, 2016, 17 (1), pp.311. ⟨10.1186/s12859-016-1186-3⟩
Journal articles hal-01868694v1
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A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp.

Sophia S. Ahmed , J. Mark Cock , Eugenie Pessia , Remy Luthringer , Alexandre Cormier et al.
Current Biology - CB, 2014, 24 (17), pp.1945-1957. ⟨10.1016/j.cub.2014.07.042⟩
Journal articles hal-01132642v1

Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.

L. Duret , Jean Cohen , Claire Jubin , Philippe Dessen , Jean-François Goût et al.
Genome Research, 2008, 18 (4), pp.585-96. ⟨10.1101/gr.074534.107⟩
Journal articles hal-00282468v1

Genome-defence small RNAs exapted for epigenetic mating-type inheritance.

Deepankar Pratap Singh , Baptiste Saudemont , Gérard Guglielmi , Olivier Arnaiz , Jean-François Goût et al.
Stem Cells and Development, 2014, 509 (7501), pp.447-52. ⟨10.1038/nature13318⟩
Journal articles hal-01015302v1
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Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

Francisco M. Cornejo-Castillo , Ana M. Cabello , Guillem Salazar , Patricia Sánchez-Baracaldo , Gipsi Lima-Mendez et al.
Nature Communications, 2016, 7, pp.11071. ⟨10.1038/ncomms11071⟩
Journal articles hal-01295207v1

Broadening the scope of Baeyer–Villiger monooxygenase activities toward α,β-unsaturated ketones: a promising route to chiral enol-lactones and ene-lactones

T. Reignier , Véronique de Berardinis , J.-L. Petit , A. Mariage , K. Hamzé et al.
Chemical Communications, 2014, 50 (58), pp.7793 - 7796. ⟨10.1039/c4cc02541e⟩
Journal articles hal-01500977v1
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Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments.

Florence Wisniewski-Dyé , Kirill Borziak , Gurusahai Khalsa-Moyers , Gladys Alexandre , Leonid O.Sukharnikov et al.
PLoS Genetics, 2011, 7 (12), pp.e1002430. ⟨10.1371/journal.pgen.1002430⟩
Journal articles halsde-00724551v1
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Recognition of the persistent organic pollutant chlordecone by a hemicryptophane cage

Augustin Long , Sara Lefevre , Laure Guy , Vincent Robert , Jean-Pierre Dutasta et al.
New Journal of Chemistry, 2019, 43 (26), pp.10222-10226. ⟨10.1039/c9nj01674k⟩
Journal articles hal-02527910v1
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Pyruvate Aldolases Catalyze Cross-Aldol Reactions between Ketones: Highly Selective Access to Multi-Functionalized Tertiary Alcohols

Victor Laurent , Léa Gourbeyre , Alexandre Uzel , Virgil Hélaine , Lionel Nauton et al.
ACS Catalysis, 2020, 10 (4), pp.2538-2543. ⟨10.1021/acscatal.9b05512⟩
Journal articles hal-02907546v1
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Rearranged Biosynthetic Gene Cluster and Synthesis of Hassallidin E in Planktothrix serta PCC 8927.

Claire Pancrace , Jouni Jokela , Nathalie Sassoon , Christelle Ganneau , Marie Desnos-Ollivier et al.
ACS Chemical Biology, 2017, 12 (7), pp.1796-1804. ⟨10.1021/acschembio.7b00093⟩
Journal articles pasteur-01535773v1

Towards standards for human fecal sample processing in metagenomic studies

Paul I. Costea , Georg Zeller , Shinichi Sunagawa , Eric Pelletier , Adriana A. Alberti et al.
Nature Biotechnology, 2017, 35 (11), pp.1069-1076. ⟨10.1038/nbt.3960⟩
Journal articles cea-02073086v1