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Structure: Internal structure identifier : 425523
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3D architecture and structural flexibility revealed in the subfamily of large glutamate dehydrogenases by a mycobacterial enzyme

Melisa Lázaro , Roberto Melero , Charlotte Huet , Jorge P López-Alonso , Sandra Delgado et al.
Communications Biology, 2021, 4 (1), pp.684. ⟨10.1038/s42003-021-02222-x⟩
Journal articles hal-03878750v1

Hybrid Electron Microscopy Normal Mode Analysis graphical interface and protocol

Carlos Oscar S. Sorzano , José Miguel de La Rosa-Trevín , Florence Tama , Slavica Jonić
Journal of Structural Biology, 2014, 188 (2), pp.134-141. ⟨10.1016/j.jsb.2014.09.005⟩
Journal articles hal-01148382v1

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

Eva-Maria Willing , Vimal Rawat , Terezie Mandáková , Florian Maumus , Geo Velikkakam James et al.
Nature Plants, 2015, 1 (2), pp.14023-14028. ⟨10.1038/nplants.2014.23⟩
Journal articles hal-01179557v1

Splines in biomedical image processing

Slavica Jonic , Carlos Oscar S. Sorzano
G. Cristobal; P. Schelkens; H. Thienpont. Optical and Digital Image Processing-Fundamentals and Applications, Wiley-VCH Verlag GmbH & Co. KGaA, 2011, ⟨10.1002/9783527635245⟩
Book sections hal-01149076v1
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Processing of Transmission Electron Microscopy Images for Single-Particle Analysis of Macromolecular Complexes

Zaelle Devaux , Carlos Oscar S. Sorzano , Slavica Jonic
Methods in Cell Biology, 2012, 112, pp.295-310. ⟨10.1016/B978-0-12-405914-6.00016-0⟩
Journal articles hal-01430532v1
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β-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity

A. Gutierrez , L. Laureti , S. Crussard , H. Abida , A. Rodríguez-Rojas et al.
Nature Communications, 2013, 4, pp.1610. ⟨10.1038/ncomms2607⟩
Journal articles pasteur-01691736v1
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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

John L Bowman , Takayuki Kohchi , Katsuyuki T Yamato , Jerry Jenkins , Shengqiang Shu et al.
Cell, 2017, 171 (2), pp.287-304.e15. ⟨10.1016/j.cell.2017.09.030⟩
Journal articles hal-03157918v1
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Unresolved advantages of multipartitism in spatially structured environments

Mark P Zwart , Stéphane Blanc , Marcelle Johnson , Susanna Manrubia , Yannis Michalakis et al.
Virus Evolution, 2021, 7 (1), ⟨10.1093/ve/veab004⟩
Journal articles hal-03219672v1
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Molecular mechanisms of Evening Complex activity in Arabidopsis

Catarina Silva , Aditya Nayak , Xuelei Lai , Stephanie Hutin , Véronique Hugouvieux et al.
Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (12), pp.6901-6909. ⟨10.1073/pnas.1920972117⟩
Journal articles hal-02527582v1

Structural insights into influenza A virus ribonucleoproteins reveal a processive helical track as transcription mechanism

Rocío Coloma , Rocío Arranz , José de La Rosa-Trevín , Carlos Sorzano , Sandie Munier et al.
Nature Microbiology, 2020, 5 (5), pp.727-734. ⟨10.1038/s41564-020-0675-3⟩
Journal articles pasteur-03065232v1

Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment

Marc F. Lensink , Sameer Velankar , Andriy Kryshtafovych , Shen-You Huang , Dina Schneidman-Duhovy et al.
Proteins - Structure, Function and Bioinformatics, 2016, Special Issue: Eleventh Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, 84 (S1), pp.323-348. ⟨10.1002/prot.25007⟩
Journal articles hal-01309105v1

Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis

Djahida Bouskra , Christophe Brézillon , Marion Bérard , Catherine Werts , Rosa Varona et al.
Nature, 2008, 456 (7221), pp.507 - 510. ⟨10.1038/nature07450⟩
Journal articles istex pasteur-01402759v1
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GeBP/GPL Transcription Factors Regulate a Subset of CPR5-Dependent Processes.

Daniel Perazza , Frédéric Laporte , Claudine Balagué , Florian Chevalier , Shanterika Remo et al.
Plant Physiology, 2011, 157 (3), pp.1232-42. ⟨10.1104/pp.111.179804⟩
Journal articles hal-00636599v1

The first single particle analysis Map Challenge: A summary of the assessments

J. Bernard Heymann , Roberto Marabini , Mohsen Kazemi , Carlos Oscar S. Sorzano , Maya Holmdahl et al.
Journal of Structural Biology, 2018, 204 (2), pp.291-300. ⟨10.1016/j.jsb.2018.08.010⟩
Journal articles hal-02324596v1

Validation of electron microscopy initial models via small angle X-ray scattering curves

Amaya Jiménez , Slavica Jonic , Tomas Majtner , Joaquín Otón , Jose Luis Vilas et al.
Bioinformatics, 2019, 35 (14), pp.2427-2433. ⟨10.1093/bioinformatics/bty985⟩
Journal articles hal-02324593v1

Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader.

Johannes Werner , Manuel Ferrer , Gurvan Michel , Alexander J Mann , Sixing Huang et al.
Environmental Microbiology, 2014, 16 (8), pp.2525-37
Journal articles hal-01113910v1

The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation.

Renata Moreno , Stefano Marzi , Pascale Romby , Fernando Rojo
Nucleic Acids Research, 2009, 37 (22), pp.7678-90. ⟨10.1093/nar/gkp825⟩
Journal articles hal-00561421v1

Ribosome-associated vesicles: A dynamic subcompartment of the endoplasmic reticulum in secretory cells

Stephen Carter , Cheri Hampton , Robert Langlois , Roberto Melero , Zachary Farino et al.
Science Advances , 2020, 6 (14), ⟨10.1126/sciadv.aay9572⟩
Journal articles hal-04004378v1

A defined in vitro system for DNA packaging by the bacteriophage SPP1 : Insights into the headful packaging mechanism

Leonor Oliveira , Juan C. Alonso , Paulo Tavares
Journal of Molecular Biology, 2005, 353 (3), pp.529-539. ⟨10.1016/j.jmb.2005.08.063⟩
Journal articles istex hal-02678325v1
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ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation

Jorge Jiménez de la Morena , Pablo Conesa , Yunior Cesar Fonseca , Federico Pedro de Isidro-Gómez , David Herreros et al.
Journal of Structural Biology, 2022, 214 (3), pp.107872. ⟨10.1016/j.jsb.2022.107872⟩
Journal articles hal-03775680v1

Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores

Rhian Jones , Michael Hons , Nadia Rabah , Noelia Zamarreño , Rocío Arranz et al.
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (12), ⟨10.1073/pnas.2213934120⟩
Journal articles hal-04041008v1

A compendium answering 150 questions on COVID‐19 and SARS‐CoV‐2

Carmen Riggioni , Pasquale Comberiati , Mattia Giovannini , Ioana Agache , Mübeccel Akdis et al.
Allergy, 2020, 75 (10), pp.2503-2541. ⟨10.1111/all.14449⟩
Journal articles hal-03609089v1

Arabidopsis ALIX regulates stomatal aperture and turnover of Abscisic acid receptors

Marta García-León , Laura Cuyas , Diaa Abd El-Moneim , Lesia Rodriguez , Borja Belda-Palazón et al.
The Plant cell, 2019, 31 (10), pp.2411-2429. ⟨10.1105/tpc.19.00399⟩
Journal articles cea-02315871v1
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Comparison of widely used Listeria monocytogenes strains EGD, 10403S, and EGD-e highlights genomic variations underlying differences in pathogenicity.

Christophe Bécavin , Christiane Bouchier , Pierre Lechat , Cristel Archambaud , Sophie Creno et al.
mBio, 2014, 5 (2), pp.e00969-14. ⟨10.1128/mBio.00969-14⟩
Journal articles pasteur-01145480v1

PhLP3 modulates CCT-mediated actin and tubulin folding via ternary complexes with substrates.

Peter C Stirling , Jorge Cuéllar , Gabriel A Alfaro , Fatima El Khadali , Christopher T Beh et al.
Journal of Biological Chemistry, 2006, 281 (11), pp.7012-21. ⟨10.1074/jbc.M513235200⟩
Journal articles hal-01183832v1
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Hybrid Electron Microscopy Normal Mode Analysis with Scipion

Mohamad Harastani , Carlos Oscar S. Sorzano , Slavica Jonic
Protein Science, 2020, 29 (1), pp.223-236. ⟨10.1002/pro.3772⟩
Journal articles hal-02388487v1

N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes.

Francis Impens , Nathalie Rolhion , Lilliana Radoshevich , Christophe Bécavin , Mélodie Duval et al.
Nature Microbiology, 2017, 2 (5), pp.17005. ⟨10.1038/nmicrobiol.2017.5⟩
Journal articles pasteur-01574963v1
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Introduction to the issue on Advanced Signal Processing in Microscopy and Cell Imaging

Charles Kervrann , Scott T. Acton , Jean-Christophe Olivo-Marin , Carlos Oscar S. Sorzano , Michael Unser et al.
IEEE Journal of Selected Topics in Signal Processing, 2016, 10 (1), pp.3-5. ⟨10.1109/JSTSP.2015.2511299⟩
Journal articles hal-01251394v1

FASTDEF: Fast defocus and astigmatism estimation for high-throughput transmission electron microscopy

J. Vargas , J. Otón , R. Marabini , S. Jonic , J.M. de La Rosa-Trevín et al.
Journal of Structural Biology, 2013, 181, pp.136-148. ⟨10.1016/j.jsb.2012.12.006⟩
Journal articles hal-00982260v1
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DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis

Amr Nassrallah , Martin Rougée , Clara Bourbousse , Stéphanie Drevensek , Sandra Fonseca et al.
eLife, 2018, 7, pp.1-29. ⟨10.7554/eLife.37892⟩
Journal articles hal-01912108v1