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A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic

Orlane Patrascu , Fabienne Beguet-Crespel , Ludovica Marinelli , Emmanuelle Le Chatelier , Anne-Laure Abraham et al.
Scientific Reports, 2017, 7, ⟨10.1038/srep40248⟩
Journal articles hal-01606551v1

The Long Noncoding RNA DNM3OS Is a Reservoir of FibromiRs with Major Functions in Lung Fibroblast Response to TGF-β and Pulmonary Fibrosis

Grégoire Savary , Edmone Dewaeles , Serena Diazzi , Matthieu Buscot , Nicolas Nottet et al.
American Journal of Respiratory and Critical Care Medicine, 2019, 200 (2), pp.184-198. ⟨10.1164/rccm.201807-1237OC⟩
Journal articles hal-02413473v1

Gut microbiome influences efficacy of PD-1–based immunotherapy against epithelial tumors

Bertrand Routy , Emmanuelle Le Chatelier , Lisa Derosa , Connie Duong , Maryam Tidjani Alou et al.
Science, 2018, 359 (6371), pp.91-97. ⟨10.1126/science.aan3706⟩
Journal articles hal-02126484v1

Towards standards for human fecal sample processing in metagenomic studies

Paul I. Costea , Georg Zeller , Shinichi Sunagawa , Eric Pelletier , Adriana A. Alberti et al.
Nature Biotechnology, 2017, 35 (11), pp.1069-1076. ⟨10.1038/nbt.3960⟩
Journal articles cea-02073086v1

Dietary intervention impact on gut microbial gene richness

Aurelie A. Cotillard , Sean S. Kennedy , Ling Chun L. C. Kong , Edi E. Prifti , Nicolas N. Pons et al.
Nature, 2013, 500, pp.585-588. ⟨10.1038/nature12480⟩
Journal articles hal-01001543v1
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Functional interplay of DnaE polymerase, DnaG primase and DnaC helicase within a ternary complex, and primase to polymerase hand-off during lagging strand DNA replication in Bacillus subtilis

Olivier Rannou , Emmanuelle Le Chatelier , Marilynn A. Larson , Hamid Nouri , Berengere Dalmais-Lenaers et al.
Nucleic Acids Research, 2013, 41 (10), pp.5303 - 5320. ⟨10.1093/nar/gkt207⟩
Journal articles hal-01190567v1
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Fuse or die: how to survive the loss of Dam in Vibrio cholerae

Marie-Eve Val , Sean Patrick Kennedy , Alfonso Soler-Bistué , Valérie Barbe , Christiane Bouchier et al.
Molecular Microbiology, 2014, 91 (4), pp.665 - 678. ⟨10.1111/mmi.12483⟩
Journal articles inserm-01285641v1
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Microbial ecology perturbation in human IgA deficiency

Jehane Fadlallah , Hela El Kafsi , Delphine Sterlin , Catherine Juste , Christophe Parizot et al.
Science Translational Medicine, 2018, 10 (439), pp.eaan1217. ⟨10.1126/scitranslmed.aan1217⟩
Journal articles hal-01997107v1

Common genetic variants influence human subcortical brain structures.

Derrek P Hibar , Jason L Stein , Miguel E Renteria , Alejandro Arias-Vasquez , Sylvane Desrivières et al.
Nature, 2015, 520 (7546), pp.224-9. ⟨10.1038/nature14101⟩
Journal articles hal-01196805v1

Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism

Eugeni Belda , Lise Voland , Valentina Tremaroli , Gwen Falony , Solia Adriouch et al.
Gut, 2022, 71 (12), pp.gutjnl-2021-325753. ⟨10.1136/gutjnl-2021-325753⟩
Journal articles hal-03873157v1
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From genomics to metagenomics: benchmark of variation graphs

Kévin da Silva , Nicolas Pons , Magali Berland , Florian Plaza Oñate , Mathieu Almeida et al.
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Conference poster hal-02284559v1

Prediction of the intestinal resistome by a three-dimensional structure-based method

Etienne Ruppé , Amine Ghozlane , Julien Tap , Nicolas Pons , Anne-Sophie Alvarez et al.
Nature Microbiology, 2019, 4 (1), pp.112-123. ⟨10.1038/s41564-018-0292-6⟩
Journal articles pasteur-02552015v1

The human gut microbiome as source of innovation for health: Which physiological and therapeutic outcomes could we expect?

Joel Dore , Marie-Christine Multon , Jehan-Michel Behier , Herve Affagard , Antoine Andremont et al.
Thérapie, 2017, 72 (1), pp.21-38. ⟨10.1016/j.therap.2016.12.007⟩
Journal articles hal-02627094v1
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Human subcortical brain asymmetries in 15,847 people worldwide reveal effects of age and sex

Tulio Guadalupe , Samuel R. Mathias , Theo G. M. Vanerp , Christopher D. Whelan , Marcel P. Zwiers et al.
Brain imaging and behavior (Brain Imaging Behav), 2017, 11 (5), pp.1497-1514. ⟨10.1007/s11682-016-9629-z⟩
Journal articles hal-01382787v1
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Construction et validation d’un premier catalogue de gènes du microbiome intestinal chez le porc

Jordi Estellé , Yuliaxis Ramayo Caldas , Nicolas Pons , Emmanuelle Le Chatelier , Edi Prifti et al.
50. Journées de la Recherche Porcine en France, 2018, NA, France
Conference papers hal-02285612v1
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Extent of horizontal gene transfer in evolution of Streptococci of the salivarius group

Christine Delorme , Claire Poyart , Stanislav Ehrlich , Pierre Renault
Journal of Bacteriology, 2007, 189 (4), pp.1330-1341. ⟨10.1128/JB.01058-06⟩
Journal articles hal-01204331v1

A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic

Orlane Patrascu , Fabienne Béguet-Crespel , Ludovica Marinelli , Emmanuelle Le Chatelier , Anne-Laure Abraham et al.
Scientific Reports, 2017, 7 (1), pp. 40248. ⟨10.1038/srep40248⟩
Journal articles hal-03802900v1

Richness of human gut microbiome correlates with metabolic markers

Emmanuelle Le Chatelier , Trine Nielsen , Junjie Qin , Edi Prifti , Falk Hildebrand et al.
Nature, 2013, 500 (7464), pp.541-546. ⟨10.1038/nature12506⟩
Journal articles hal-01190602v1
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Novel genetic loci associated with hippocampal volume

Derrek P. Hibar , Hieab H. H. Adams , Neda Jahanshad , Ganesh Chauhan , Jason L. Stein et al.
Nature Communications, 2017, 8, pp.13624. ⟨10.1038/ncomms13624⟩
Journal articles hal-01488337v1
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Functional metagenomics to decipher food-microbe-host crosstalk

Pierre Larraufie , Tomas de Wouters , Gabrielle Veronese , Herve M. Blottiere , Joel Dore et al.
Proceedings of the Nutrition Society, 2015, 74 (1), pp.1-4. ⟨10.1017/S0029665114001566⟩
Journal articles hal-01183892v1

CDC20B is required for deuterosome-mediated centriole production in multiciliated cells

Diego R Revinski , Laure-Emmanuelle Zaragosi , Camille Boutin , Sandra Ruiz-Garcia , Marie Deprez et al.
Nature Communications, 2018, 9 (1), ⟨10.1038/s41467-018-06768-z⟩
Journal articles hal-02407213v1
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Dossier de presse INRA 2017 : microbiote, la révolution intestinale

Joël Dore , Dusko Ehrlich , Véronique Monnet , Emmanuelle Le Chatelier , Marianne de Paepe et al.
Other publications hal-01605701v1
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Butyrate produced by commensal bacteria down-regulates indolamine 2, 3-dioxygenase 1 (IDO-1) expression via a dual mechanism in human intestinal epithelial cells

Camille Martin-Gallausiaux , Pierre Larraufie , Anne Jarry , Fabienne F. Beguet-Crespel , Ludovica Marinelli et al.
Frontiers in Immunology, 2018, 9, ⟨10.3389/fimmu.2018.02838⟩
Journal articles inserm-01937996v1

Associations Between Attention-Deficit/Hyperactivity Disorder and Various Eating Disorders: A Swedish Nationwide Population Study Using Multiple Genetically Informative Approaches

Ralf Kuja-Halkola , Joanna Martin , Yi Lu , Christopher Hübel , Catarina Almqvist et al.
Biological Psychiatry, 2019, 86 (8), pp.577-586. ⟨10.1016/j.biopsych.2019.04.036⟩
Journal articles hal-02575225v1

Intestinal microbiota: what to expect physiologically and therapeutically?

Joël Dore , Marie-Christine Multon , Jehan-Michel Behier , Herve Affagard , Antoine Andremont et al.
Thérapie, 2017, 72 (1), pp.1 - 19. ⟨10.1016/j.therap.2017.01.001⟩
Journal articles hal-01603836v1

Design of a custom equine microRNA expression microarray using RNAseq data analysis of various equine tissues

Eric Barrey , Núria Mach , Xavier Mata , Anne Vaiman , Marco Moroldo et al.
Agilent 1. European Animal and Plant Symposium, Feb 2014, Amsterdam, Netherlands
Conference papers hal-02801791v1
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Indole, a Signaling Molecule Produced by the Gut Microbiota, Negatively Impacts Emotional Behaviors in Rats

Mathilde Jaglin , Moez Rhimi , Catherine Philippe , Nicolas Pons , Aurelia Bruneau et al.
Frontiers in Neuroscience, 2018, 1, ⟨10.3389/fnins.2018.00216⟩
Journal articles hal-02361347v1
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Altered structural brain asymmetry in autism spectrum disorder in a study of 54 datasets

Merel Postema , Daan D van Rooij , Evdokia Anagnostou , Celso Arango , Guillaume M Auzias et al.
Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-13005-8⟩
Journal articles hal-02365089v1
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Quality control of microbiota metagenomics by k-mer analysis

Florian Plaza Onate , Jean-Michel Batto , Catherine Juste , Jehane Fadlallah , Cyrielle Fougeroux et al.
BMC Genomics, 2015, 16 (1), pp.183. ⟨10.1186/s12864-015-1406-7⟩
Journal articles hal-01143359v1
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Interactions of the Bacillus subtilis DnaE polymerase with replisomal proteins modulate its activity and fidelity

Vasileios Paschalis , Emmanuelle Le Chatelier , Matthew Green , François Képès , Panos Soultanas et al.
Open Biology, 2017, 7 (9), pp.1-20. ⟨10.1098/rsob.170146⟩
Journal articles hal-02625644v1