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Structure: Internal structure identifier : 46211
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Integrative Modelling of the Influence of MAPK Network on Cancer Cell Fate Decision

Luca Grieco , Laurence Calzone , Isabelle Bernard-Pierrot , François Radvanyi , Brigitte Kahn-Perlès et al.
PLoS Computational Biology, 2013, 9 (10), pp.e1003286. ⟨10.1371/journal.pcbi.1003286⟩
Journal articles inserm-02152259v1
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A polygenic risk score for multiple myeloma risk prediction

Federico Canzian , Chiara Piredda , Angelica Macauda , Daria Zawirska , Niels Frost Andersen et al.
European Journal of Human Genetics, 2021, Online ahead of print. ⟨10.1038/s41431-021-00986-8⟩
Journal articles inserm-03480934v1
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TUMOSPEC: A Nation-Wide Study of Hereditary Breast and Ovarian Cancer Families with a Predicted Pathogenic Variant Identified through Multigene Panel Testing

Fabienne Lesueur , Séverine Eon-Marchais , Sarah Bonnet-Boissinot , Juana Beauvallet , Marie-Gabrielle Dondon et al.
Cancers, 2021, 13 (15), pp.3659. ⟨10.3390/cancers13153659⟩
Journal articles hal-03345372v1
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Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network

Andrei Zinovyev , Urszula Czerwinska , Laura Cantini , Emmanuel Barillot , Klaus M. Frahm et al.
PLoS Computational Biology, 2020, ⟨10.1371/journal.pcbi.1007652⟩
Journal articles hal-02114063v1
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Synthesis and Simulation of Ensembles of Boolean Networks for Cell Fate Decision

Stéphanie Chevalier , Vincent Noël , Laurence Calzone , Andrei Zinovyev , Loïc Paulevé et al.
18th International Conference on Computational Methods in Systems Biology (CMSB), 2020, Online, Germany. pp.193--209, ⟨10.1007/978-3-030-60327-4_11⟩
Conference papers hal-02898849v2
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Mechanical induction of the tumorigenic b-catenin pathway by tumour growth pressure

Maria Elena Fernandez-Sanchez , Sandrine Barbier , Joanne Whitehead , Gaelle Bealle , Aude Michel et al.
Nature, 2015, 523 (7558), pp.92-95. ⟨10.1038/nature14329⟩
Journal articles inserm-02441063v1
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New insight for pharmacogenomics studies from the transcriptional analysis of two large-scale cancer cell line panels (vol 7, 15126, 2016)

Benjamin Sadacca , Anne-Sophie Hamy , C. Laurent , Pierre Gestraud , Hélène Bonsang-Kitzis et al.
Scientific Reports, 2018, 8, ⟨10.1038/s41598-018-36812-3⟩
Journal articles hal-02619813v1
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Transcriptome analysis of Wnt3a-treated triple-negative breast cancer cells

Sylvie Maubant , Bruno Tesson , Virginie Maire , Mengliang Ye , Guillem Rigaill et al.
PLoS ONE, 2015, 10 (4), 26 p. ⟨10.1371/journal.pone.0122333⟩
Journal articles hal-02639667v1
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The intestinal microbiota interferes with the microRNA response upon oral Listeria infection.

Cristel Archambaud , Odile Sismeiro , Joern Toedling , Guillaume Soubigou , Christophe Bécavin et al.
mBio, 2012, 4 (6), pp.e00707-13. ⟨10.1128/mBio.00707-13⟩
Journal articles hal-01350904v1

Toll-like receptor control of glucocorticoid-induced apoptosis in human plasmacytoid pre-dendritic cells (pDC).

Y. Lepelletier , R. Zollinger , C. Ghirelli , F. Raynaud , R. Hadj-Slimane et al.
Blood, 2010, 116, pp.3389-3397. ⟨10.1182/blood-2010-05-282913⟩
Journal articles hal-00508701v1

Robust Seriation and Applications to Cancer Genomics

Antoine Recanati , Nicolas Servant , Jean-Philippe Vert , Alexandre d'Aspremont
Preprints, Working Papers, ... hal-01851960v1

The Weighted Kendall and High-order Kernels for Permutations

Yunlong Jiao , Jean-Philippe Vert
35th International Conference on Machine Learning, Jul 2018, Stockholm, Sweden. pp.2314--2322
Conference papers hal-01717385v1

Spatial transcriptomics for respiratory research and medicine

Sandra Curras-Alonso , Juliette Soulier , Thomas Walter , Florian Mueller , Arturo Londoño-Vallejo et al.
European Respiratory Journal, 2021, 58 (1), pp.2004314. ⟨10.1183/13993003.04314-2020⟩
Journal articles hal-03376218v1
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EMA - A R package for Easy Microarray data analysis.

Nicolas Servant , Eleonore Gravier , Pierre Gestraud , Cecile Laurent , Caroline Paccard et al.
BMC Research Notes, 2010, 3 (1), pp.277. ⟨10.1186/1756-0500-3-277⟩
Journal articles inserm-00984710v1
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On learning matrices with orthogonal columns or disjoint supports

Kevin Vervier , Pierre Mahé , Alexandre d'Aspremont , Jean-Baptiste Veyrieras , Jean-Philippe Vert et al.
Preprints, Working Papers, ... hal-00985654v2
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Mathematical modelling of cell-fate decision in response to death receptor engagement.

Laurence Calzone , Laurent Tournier , Simon Fourquet , Denis Thieffry , Boris Zhivotovsky et al.
PLoS Computational Biology, 2010, 6 (3), pp.e1000702. ⟨10.1371/journal.pcbi.1000702⟩
Journal articles inserm-00704979v1
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[Cancer genetics: estimation of the needs of the population in France for the next ten years]

Catherine Bonaïti-Pellié , Nadine Andrieu , Patrick Arveux , Valérie Bonadona , Bruno Buecher et al.
Bulletin du Cancer, 2009, 96 (9), pp.875-900. ⟨10.1684/bdc.2009.0943⟩
Journal articles inserm-00419527v1
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Role of DNA Repair Variants and Diagnostic Radiology Exams in Differentiated Thyroid Cancer Risk: A Pooled Analysis of Two Case–Control Studies

Monia Zidane , Thérèse Truong , Fabienne Lesueur , Constance Xhaard , Emilie Cordina-Duverger et al.
Cancer Epidemiology, Biomarkers and Prevention, 2021, 30 (6), pp.1208-1217. ⟨10.1158/1055-9965.EPI-20-1142⟩
Journal articles hal-03378112v1
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Variation in breast cancer risk with mutation position smoking alcohol and chest X-ray history in the French National BRCA1/2 carrier cohort (GENEPSO)

Julie Lecarpentier , Catherine Noguès , Emmanuelle Mouret-Fourme , Dominique Stoppa-Lyonnet , Christine Lasset et al.
Breast Cancer Research and Treatment, 2011, 130 (3), pp.927-938. ⟨10.1007/s10549-011-1655-3⟩
Journal articles hal-00698006v1
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Dynamical Boolean Modeling of Immunogenic Cell Death

Andrea Checcoli , Jonathan Pol , Aurelien Naldi , Vincent Noël , Emmanuel Barillot et al.
Frontiers in Physiology, 2020, 11, pp.590479. ⟨10.3389/fphys.2020.590479⟩
Journal articles hal-03050475v1

Molecular Underpinnings and Environmental Drivers of Spontaneous Loss of Heterozygosity in Drosophila Intestinal Stem Cells

Lara Al Zouabi , Marine Stefanutti , Nick Riddiford , Natalia Rubanova , Mylène Bohec et al.
Preprints, Working Papers, ... hal-03842697v1
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BAP1 complex promotes transcription by opposing PRC1-mediated H2A ubiquitylation

Antoine Campagne , Ming-Kang Lee , Dina Zielinski , Audrey A. Michaud , Stéphanie Le Corre et al.
Nature Communications, 2019, 10, pp.348. ⟨10.1038/s41467-018-08255-x⟩
Journal articles hal-02008379v1
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Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes

Yuvia A Pérez-Rico , Valentina Boeva , Allison C Mallory , Angelo Bitetti , Sara Majello et al.
Genome Research, 2016, 27 (2), pp.259 - 268. ⟨10.1101/gr.203679.115⟩
Journal articles hal-03983132v1
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Highly dynamic and sex-specific expression of microRNAs during early ES cell differentiation.

Constance Ciaudo , Nicolas Servant , Valérie Cognat , Alexis Sarazin , Emmanuelle Kieffer et al.
PLoS Genetics, 2009, 5 (8), pp.e1000620. ⟨10.1371/journal.pgen.1000620⟩
Journal articles inserm-00438642v1
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Model learning to identify systemic regulators of the peripheral circadian clock

Julien Martinelli , Sandrine Dulong , Xiao-Mei Li , Michèle Teboul , Sylvain Soliman et al.
Bioinformatics, 2021, 37 (Supplement_1), pp.9. ⟨10.1093/bioinformatics/btab297⟩
Journal articles hal-03183579v1
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Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

Nicolas Levy , Aurélien Naldi , Céline Hernandez , Gautier Stoll , Denis Thieffry et al.
Frontiers in Physiology, 2018, 9, pp.787. ⟨10.1101/319780⟩
Journal articles hal-01809081v1
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Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop

Anna Niarakis , Martin Kuiper , Marek Ostaszewski , Rahuman Malik Sheriff , Cristina Casals-Casas et al.
Briefings in Bioinformatics, 2021, 22 (2), pp.1848--1859. ⟨10.1093/bib/bbaa046⟩
Journal articles hal-02549796v1
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GENESIS: a French national resource to study the missing heritability of breast cancer

Olga M Sinilnikova , Marie-Gabrielle Dondon , Séverine Eon-Marchais , Francesca Damiola , Laure Barjhoux et al.
BMC Cancer, 2016, 16 (1), pp.606 - 606. ⟨10.1186/s12885-015-2028-9⟩
Journal articles hal-01662200v1
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A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression

Jing Liu , Daniela Ottaviani , Meriem Sefta , Céline Desbrousses , Elodie Chapeaublanc et al.
Nature Communications, 2021, 12 (1), pp.1-20. ⟨10.1038/s41467-021-25792-0⟩
Journal articles hal-03374490v1

Impaired PRC2 activity promotes transcriptional instability and favors breast tumorigenesis

Michel Adam Wassef , Verónica Rodilla , Aurélie Teissandier , Bruno Zeitouni , Nadège Gruel et al.
Genes and Development, 2015, 29 (24), pp.2547-2562. ⟨10.1101/gad.269522.115⟩
Journal articles hal-02559123v1