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Structure: Internal structure identifier : 542183

Computational Prediction of Genomic Functional Cores Specific to Different Microbes

Alessandra Carbone
Journal of Molecular Evolution, 2006, 63 (6), pp.733-746. ⟨10.1007/s00239-005-0250-9⟩
Journal articles hal-03911496v1

The Craig Interpolation Theorem for Schematic Systems

Alessandra Carbone
Collegium Logicum, 2, Springer Vienna, pp.87-100, 1996, Collegium Logicum, ⟨10.1007/978-3-7091-9461-4_6⟩
Book sections hal-03911517v1

Codon Bias Signatures, Organization of Microorganisms in Codon Space, and Lifestyle

Alessandra Carbone , François Képès , Andrei Zinovyev
Molecular Biology and Evolution, 2005, 22 (3), pp.547-561. ⟨10.1093/molbev/msi040⟩
Journal articles hal-03911505v1
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A hybrid discrete-continuum modelling approach to explore the impact of T-cell infiltration on anti-tumour immune response

Luis Almeida , Chloe Audebert , Emma Leschiera , Tommaso Lorenzi
Bulletin of Mathematical Biology, In press
Journal articles hal-03722100v3

Looking From The Inside And From The Outside

Alessandra Carbone , Stephen Semmes
Synthese, 2000, 125 (3), pp.385-416. ⟨10.1023/A:1005244027724⟩
Journal articles hal-03911640v1
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First in vivo analysis of the regulatory protein CP12 of the model cyanobacterium Synechocystis PCC 6803: Biotechnological implications

Victoire Blanc-Garin , Théo Veaudor , Pierre Sétif , Brigitte Gontero , Stéphane Lemaire et al.
Frontiers in Plant Science, 2022, 13, ⟨10.3389/fpls.2022.999672⟩
Journal articles hal-03775884v1

The prion protein is critical for DNA repair and cell survival after genotoxic stress

Anne Bravard , Frédéric Auvré , Damiano Fantini , Jacqueline Bernardino-Sgherri , Ludmilla Sissoëff et al.
Nucleic Acids Research, 2015, 43 (2), pp.904-916. ⟨10.1093/nar/gku1342⟩
Journal articles hal-02325834v1
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The budding yeast life cycle: More complex than anticipated?

Gilles Fischer , Gianni Liti , Bertrand Llorente
Yeast, 2021, 38 (1), pp.5-11. ⟨10.1002/yea.3533⟩
Journal articles hal-03086108v1

How the shortest telomere in the cell signals senescence

Prisca Berardi , Stefano Mattarocci , Rachel Langston , Pascale Jolivet , Gilles Charvin et al.
EMBO Workshop on Telomere function and evolution in health and disease, EMBO, Sep 2022, Troia, Portugal
Conference papers hal-03960641v1

Yap7 is a transcriptional repressor of nitric oxide oxidase in yeasts, which arose from neofunctionalization after whole genome duplication

Jawad Merhej , Thierry Delaveau , Juliette Guitard , Benoit Palancade , Christophe Hennequin et al.
Molecular Microbiology, 2015, 96 (5), pp.951-972. ⟨10.1111/mmi.12983⟩
Journal articles hal-04015694v1

Yap7 is a transcriptional repressor of nitric oxide oxidase in yeasts, which arose from neofunctionalization after whole genome duplication

Jawad Merhej , Thierry Delaveau , Juliette Guitard , Benoit Palancade , Christophe Hennequin et al.
Molecular Microbiology, 2015, 96 (5), pp.951-972. ⟨10.1111/mmi.12983⟩
Journal articles hal-04023395v1
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l-Galactono-1,4-lactone Dehydrogenase Is Required for the Accumulation of Plant Respiratory Complex I

Bernard Pineau , Ouardia Layoune , Antoine Danon , Rosine de Paepe
Journal of Biological Chemistry, 2008, 283 (47), pp.32500 - 32505. ⟨10.1074/jbc.m805320200⟩
Journal articles hal-03721545v1
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Phylogenetic Reconstruction Based on Synteny Block and Gene Adjacencies

Guénola Drillon , Raphaël Champeimont , Francesco Oteri , Gilles Fischer , Alessandra Carbone et al.
Molecular Biology and Evolution, 2020, 37 (9), pp.2747-2762. ⟨10.1093/molbev/msaa114⟩
Journal articles hal-02968249v1
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When Unity Is Strength: The Strategies Used by Chlamydomonas to Survive Environmental Stresses

Félix de Carpentier , Stéphane Lemaire , Antoine Danon
Journal articles hal-03030993v1
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Structure-specific DNA recombination sites: Design, validation, and machine learning–based refinement

Aleksandra Nivina , Maj Svea Grieb , Céline Loot , David Bikard , Jean Cury et al.
Science Advances , 2020, 6 (30), pp.eaay2922. ⟨10.1126/sciadv.aay2922⟩
Journal articles hal-03084479v1
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Architecture and evolution of subtelomeres in the unicellular green alga Chlamydomonas reinhardtii

Frédéric Chaux-Jukic , Samuel O'Donnell , Rory J Craig , Stephan Eberhard , Olivier Vallon et al.
Nucleic Acids Research, 2021, ⟨10.1093/nar/gkab534⟩
Journal articles hal-03272068v1
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MyCLADE: a multi-source domain annotation server for sequence functional exploration

Riccardo Vicedomini , Clémence Blachon , Francesco Oteri , Alessandra Carbone
Nucleic Acids Research, 2021, 49 (W1), pp.W452 - W458. ⟨10.1093/nar/gkab395⟩
Journal articles hal-03294232v1
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An evolutionary model identifies the main evolutionary biases for the evolution of genome-replication profiles

Rossana Droghetti , Nicolas Agier , Gilles Fischer , Marco Gherardi , Marco Cosentino Lagomarsino et al.
eLife, 2021, 10, ⟨10.7554/eLife.63542⟩
Journal articles hal-03451843v1
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Transcriptional networks of the stress responses in the human pathogen Candida glabrata

Antonin Thiébaut
Biochemistry, Molecular Biology. Sorbonne Université, 2018. English. ⟨NNT : 2018SORUS485⟩
Theses tel-02613739v1
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Crystal structure of chloroplastic thioredoxin z defines a type-specific target recognition

Théo Le Moigne , Libero Gurrieri , Pierre Crozet , Christophe Marchand , Mirko Zaffagnini et al.
Plant Journal, 2021, ⟨10.1111/tpj.15300⟩
Journal articles hal-03280204v1
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Decrypting protein surfaces by combining evolution, geometry, and molecular docking

Chloé Dequeker , Elodie Laine , Alessandra Carbone
Proteins - Structure, Function and Bioinformatics, 2019, 87 (11), pp.952-965. ⟨10.1002/prot.25757⟩
Journal articles hal-02321652v1
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Propositional proofs via combinatorial geometry and the search for symmetry.

Alessandra Carbone , Stephen Semmes
Conference papers hal-03911749v1

Control of Plasma Membrane Permeability by ABC Transporters

Svetlana Khakhina , Soraya Johnson , Raman Manoharlal , Sarah Russo , Corinne Blugeon et al.
Eukaryotic Cell, 2015, 14 (5), pp.442-453. ⟨10.1128/EC.00021-15⟩
Journal articles hal-03842671v1
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On the effect of phylogenetic correlations in coevolution-based contact prediction in proteins

Edwin Rodriguez Horta , Martin Weigt
PLoS Computational Biology, 2021, 17 (5), pp.e1008957. ⟨10.1371/journal.pcbi.1008957⟩
Journal articles hal-03236225v1
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Adaptation to DNA damage as a bet-hedging mechanism in a fluctuating environment

Pierre Roux , Delphine Salort , Zhou Xu
Royal Society Open Science, 2021, 8 (8), pp.210460. ⟨10.1098/rsos.210460⟩
Journal articles hal-03350453v1
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Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis

Gianluca Teano , Lorenzo Concia , Léopold Carron , Léa Wolff , Kateřina Adamusová et al.
Preprints, Working Papers, ... hal-03099675v1

The ATG4 protease integrates redox and stress signals to regulate autophagy

María Esther Pérez-Pérez , Stéphane Lemaire , José Crespo
Journal of Experimental Botany, 2021, 72 (9), pp.3340-3351. ⟨10.1093/jxb/erab063⟩
Journal articles hal-03438299v1
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Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes

Juan Rodriguez-Rivas , Giancarlo Croce , Maureen Muscat , Martin Weigt
Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (4), pp.e2113118119. ⟨10.1073/pnas.2113118119/-/DCSupplemental.⟩
Journal articles hal-03528553v1

Structural and mechanistic investigation on mitochondrial fusion.

Mohammad Ozeir , Laetitia Cavellini , Thomas Chenuel , Julien Henri , Philippe Meyer et al.
GFB 2021, Sep 2021, Virtuelle, France
Conference poster hal-03972737v1
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B cell receptor repertoire analysis in clinical context : new approaches for clonal grouping, intra-clonal diversity studies, and repertoire visualization

Nika Abdollahi
Immunology. Sorbonne Université, 2021. English. ⟨NNT : 2021SORUS063⟩
Theses tel-03482030v1