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Single-particle XFEL 3D reconstruction of ribosome-size particles based on Fourier slice matching: requirements to reach subnanometer resolution
Miki Nakano
,
Osamu Miyashita
,
Slavica Jonic
,
Atsushi Tokuhisa
,
Florence Tama
et al.
Journal articles
hal-02324599v1
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Editorial: Hybrid Biomolecular Modeling
Slavica Jonic
,
Osamu Miyashita
,
Isabelle Callebaut
Journal articles
hal-02324595v1
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Toward an integrated NWP-DA-AI system for 30-second-update precipitation prediction
Shigenori Otsuka
,
Yasumitsu Maejima
,
Pierre Tandeo
,
Takemasa Miyoshi
ECMWF-ESA Workshop on Machine Learning for Earth System Observation and Prediction, Oct 2020, Virtual Conference, United Kingdom
Conference poster
hal-02967547v1
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A Case Study of the Reproducibility Issues in EigenExa
Roman Iakymchuk
,
Imamura Toshiyuki
,
Stef Graillat
,
Stefano Markidis
,
Erwin Laure
et al.
EASC2016, Exascale Applications and Software Conference, Apr 2016, Stockholm, Sweden
Conference papers
hal-01539365v1
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Conjugate Gradient Solvers with High Accuracy and Bit-wise Reproducibility between CPU and GPU using Ozaki Scheme
Daichi Mukunoki
,
Katsuhisa Ozaki
,
Takeshi Ogita
,
Roman Iakymchuk
2020
Preprints, Working Papers, ...
hal-02986873v1
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Remedies for Reproducibility Issue in Conjugate Gradient Solvers
Daichi Mukunoki
,
Roman Iakymchuk
,
Fabienne Jézéquel
,
Katsuhisa Ozaki
,
Takeshi Ogita
et al.
Sparse Days conference, Jun 2022, Saint-Girons, France
Conference poster
hal-03783027v1
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Neutron star mergers as the astrophysical site of the r-process in the Milky Way and its satellite galaxies
Shinya Wanajo
,
Yutaka Hirai
,
Nikos Prantzos
Journal articles
hal-03422626v1
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Comparing the performance of rigid, moldable and grid-shaped applications on failure-prone HPC platforms
Valentin Le Fèvre
,
Thomas Herault
,
Yves Robert
,
Aurelien Bouteiller
,
Atsushi Hori
et al.
Journal articles
hal-03360189v1
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An International Survey on MPI Users
Atsushi Hori
,
Emmanuel Jeannot
,
George Bosilca
,
Takahiro Ogura
,
Balazs Gerofi
et al.
Journal articles
hal-03347652v1
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3rd IEEE International Workshop on Extreme-Scale Storage and Analysis (ESSA 2022)
Osamu Tatebe
,
Gabriel Antoniu
,
Kento Sato
,
Murali Emani
Proceedings
hal-03933407v1
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Protein - ligand interactions from a quantum fragmentation perspective : the case of the SARS-CoV-2 main protease interacting with α−ketoamide inhibitors
Luigi Genovese
,
William Dawson
,
Takahito Nakajima
,
Viviana Cristiglio
,
Valérie Vallet
et al.
2020
Preprints, Working Papers, ...
hal-02933298v1
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Macromolecular Dynamics by Hybrid Electron Microscopy Normal Mode Analysis
Qiyu Jin
,
Carlos Oscar S. Sorzano
,
Jose Miguel de La Rosa-Trevín
,
Florence Tama
,
Slavica Jonić
et al.
Conference papers
hal-01431467v1
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Hybrid approach for structural modeling of biological systems from X-ray free electron laser diffraction patterns
Atsushi Tokuhisa
,
Slavica Jonic
,
Florence Tama
,
Osamu Miyashita
Journal articles
hal-01430528v1
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Iterative Elastic 3D-to-2D Alignment Method Using Normal Modes for Studying Structural Dynamics of Large Macromolecular Complexes
Qiyu Jin
,
Carlos Oscar S. Sorzano
,
José Miguel de La Rosa-Trevín
,
José Román Bilbao-Castro
,
Rafael Nunez-Ramirez
et al.
Journal articles
hal-01430531v1
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NMMD: Efficient cryo-EM flexible fitting based on simultaneous Normal Mode and Molecular Dynamics atomic displacements
Rémi Vuillemot
,
Osamu Miyashita
,
Florence Tama
,
Isabelle Rouiller
,
Slavica Jonic
et al.
Journal articles
hal-03577246v1
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Joint Estimation of Model and Observation Error Covariance Matrices in Data Assimilation: a Review
Pierre Tandeo
,
Pierre Ailliot
,
Marc Bocquet
,
Alberto Carrassi
,
Takemasa Miyoshi
et al.
2018
Preprints, Working Papers, ...
hal-01867958v1
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Blind test of density-functional-based methods on intermolecular interaction energies
Decarlos Taylor
,
János Ángyán
,
Giulia Galli
,
Cui Zhang
,
Francois Gygi
et al.
Journal articles
hal-03958068v1
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Global structure and sodium ion dynamics in Mercury's magnetosphere with the offset dipole
Manabu Yagi
,
Kanako Seki
,
Y. Matsumoto
,
Dominique C. Delcourt
,
François Leblanc
et al.
Journal articles
insu-01585106v1
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Can we avoid rounding-error estimation in HPC codes and still get trustful results?
Fabienne Jézéquel
,
Stef Graillat
,
Daichi Mukunoki
,
Toshiyuki Imamura
,
Roman Iakymchuk
et al.
2020
Preprints, Working Papers, ...
hal-02486753v1
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Minimal-Precision Computing for High-Performance, Energy-Efficient, and Reliable Computations
Taisuke Boku
,
Norihisa Fujita
,
Stef Graillat
,
Jens Huthmann
,
Roman Iakymchuk
et al.
2nd R-CCS international symposium, K to Fugaku: Simulation, Big Data and AI supporting Society 5.0, Feb 2020, Kobe, Japan
Conference poster
hal-02486850v1
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Minimal-Precision Computing for High-Performance, Energy-Efficient, and Reliable Computations
Taisuke Boku
,
Norihisa Fujita
,
Stef Graillat
,
Jens Huthmann
,
Roman Iakymchuk
et al.
International Conference on High Performance Computing, Networking, Storage and Analysis (SC19), Nov 2019, Denver, United States
Conference poster
hal-02401757v1
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Is Japanese HPC another Galapagos? - Interim Report of MPI International Survey
Atsushi Hori
,
George Bosilca
,
Emmanuel Jeannot
,
Takahiro Ogura
,
Yutaka Ishikawa
et al.
Summer United Workshops on Parallel, Distributed and Cooperative Processing, Jul 2019, Kitami, Japan
Conference papers
hal-02193264v1
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Do moldable applications perform better on failure-prone HPC platforms?
Valentin Le Fèvre
,
George Bosilca
,
Aurelien Bouteiller
,
Thomas Herault
,
Atsushi Hori
et al.
[Research Report] RR-9174, Inria Grenoble Rhône-Alpes. 2018, pp.1-24
Reports
hal-01799498v1
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Seamless Simulations of Earthquake Disasters and Economy at 1:1 scale Utilizing Big-data
Amit Gill
,
Maddegedara Lalith
,
Yoshiki Ogawa
,
Hideyuki O-Tani
,
Tsuyoshi Ichimura
et al.
WI-IAT '21: IEEE/WIC/ACM International Conference on Web Intelligence, Dec 2021, Melbourne VIC, Australia. pp.101-108, ⟨10.1145/3498851.3498937⟩
Conference papers
hal-03677307v1
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MYX: Runtime Correctness Analysis for Multi-Level Parallel Programming Paradigms
Joachim Protze
,
Miwako Tsuji
,
Christian Terboven
,
Thomas Dufaud
,
Hitoshi Murai
et al.
Software for Exascale Computing - SPPEXA 2016-2019, 136, Springer International Publishing, pp.545-567, 2020, Lecture Notes in Computational Science and Engineering, ⟨10.1007/978-3-030-47956-5_18⟩
Book sections
hal-03429330v1
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Multi-SPMD Programming Model with YML and XcalableMP
Miwako Tsuji
,
Hitoshi Murai
,
Taisuke Boku
,
Mitsuhisa Sato
,
Serge Petiton
et al.
Book sections
hal-03429306v1
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A comprehensive workflow for general-purpose neural modeling with highly configurable neuromorphic hardware systems.
Daniel Brüderle
,
Mihai A Petrovici
,
Bernhard Vogginger
,
Matthias Ehrlich
,
Thomas Pfeil
et al.
Journal articles
hal-00635967v1
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A Review of Innovation-Based Methods to Jointly Estimate Model and Observation Error Covariance Matrices in Ensemble Data Assimilation
Pierre Tandeo
,
Pierre Ailliot
,
Marc Bocquet
,
Alberto Carrassi
,
Takemasa Miyoshi
et al.
Journal articles
hal-02922301v1
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Prefetching on storage servers through mining access patterns on blocks
Jianwei Liao
,
François Trahay
,
Balazs Gerofi
,
Yutaka Ishikawa
Journal articles
hal-01354329v1
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Hybrid Electron Microscopy Normal Mode Analysis graphical interface and protocol
Carlos Oscar S. Sorzano
,
José Miguel de La Rosa-Trevín
,
Florence Tama
,
Slavica Jonić
Journal articles
hal-01148382v1
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