To exploit scientific publications from global research for TDM purposes, the ISTEX platform enriched its data with value-added information to ease access to its full-text documents. We built an experiment to explore new enrichment possibilities in documents focussing on scientific named entities recognition which could be integrated into ISTEX resources. This led to testing two detection tools for animal species names in a corpus of 100 documents in zoology. This makes it possible to provide the French scientific community with an annotated reference corpus available for use to measure these tools' performance.