While numerous studies have examined the effect of N deposition on ecosystem N retention, few have analyzed the involvement of plant species and climate warming in this process. We experimentally investigated the effects of increasing N deposition (Nexo) and climate warming on the fate of Nexo in a subalpine meadow and established the involvement of plant species. Using 15N tracer, we tracked Nexo sprayed on the vegetation in belowground and aboveground plant biomasses (AGB) and in bulk soil over three growing seasons. We assessed the Nexo absorption capacity of plant species and the contribution of Nexo to their AGB N pool. The meadow retained a large proportion of Nexo (≈65%, mostly in AGB) for depositions up to four times the background N rate. Nexo present in the meadow compartments in year 2 was still present in year 3, suggesting that the ecosystem was unsaturated after three years of high N input. Nexo retention resulted more from an increase in N concentration in plant tissues than from the increase in AGB. The species-specific Nexo absorption capacity was inversely related to their AGB N concentration. Nexo accounted for up to 40% of total AGB N depending on the species and the N treatments. The contribution of species to ecosystem Nexo retention more contingent on their AGB than on their relative cover in the community, ranked as follows: C. vulgaris (14.0%) > N. stricta (7.0%) > other Poaceae = C. caryophyllea (2.5%) > other Eudicotyledons (1.5%) > non-vascular species = P. erecta > Fabaceae (0.8–0.2%). Climate warming increased AGB and decreased tissue N concentration. No warming-Nexo interaction was observed. Thus, Pyrenean subalpine meadows that have not undergone a decline in plant species richness in recent decades paradoxically display a high potential to sequester atmospheric N deposition.