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Article Dans Une Revue Bioinformatics Année : 2006

HoSeql : automated homologous sequence identification in gene family databases

Résumé

We present a web service allowing to automatically assign sequences to homologous gene families from a set of databases. After identification of the most similar gene family to the query sequence, this sequence is added to the whole alignment and the phylogenetic tree of the family is rebuilt. Thus, the phylogenetic position of the query sequence in its gene family can be easily identified.

Domaines

Autre [q-bio.OT]

Dates et versions

hal-00427893 , version 1 (28-10-2009)

Identifiants

Citer

Anne-Muriel Arigon Chifolleau, G. Perrière, Manolo Gouy. HoSeql : automated homologous sequence identification in gene family databases. Bioinformatics, 2006, 22 (14), pp.1786-1787. ⟨10.1093/bioinformatics/btl179⟩. ⟨hal-00427893⟩
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