Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition - Laboratoire d'Ecogéochimie des Environnements Benthiques Access content directly
Preprints, Working Papers, ... Year : 2022

Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

1 LBGB - Laboratoire de Bioinformatique pour la Génomique et la Biodiversité
2 LAGE - Laboratoire d'Analyses Génomiques des Eucaryotes
3 GENOSCOPE - Genoscope - Centre national de séquençage [Evry]
4 UMR 8030 - Génomique métabolique
5 I2BC - Institut de Biologie Intégrative de la Cellule
6 CNRGH - Centre National de Recherche en Génomique Humaine
7 Universität Konstanz
8 LECOB - Laboratoire d'Ecogéochimie des environnements benthiques
9 Weizmann Institute of Science [Rehovot, Israël]
10 JLU - Justus-Liebig-Universität Gießen = Justus Liebig University
11 D-BIOL - Department of Biology [ETH Zürich]
12 CRIOBE - Centre de recherches insulaires et observatoire de l'environnement
13 SBR - Station biologique de Roscoff = Roscoff Marine Station
14 University of Maine
15 Tara Expéditions
16 CONACYT-CIBNOR - Centro de Investigaciones Biologicas del Noroeste [Mexico]
17 Université de Tsukuba = University of Tsukuba
18 LabEX CORAIL - Laboratoire d'Excellence CORAIL
19 IBENS - Institut de biologie de l'ENS Paris
20 LSCE - Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette]
21 GEOTRAC - Géochrononologie Traceurs Archéométrie
22 IRCAN - Institut de Recherche sur le Cancer et le Vieillissement
23 UCA - Université Côte d'Azur
24 LOV - Laboratoire d'océanographie de Villefranche
25 EMBL - European Molecular Biology Laboratory
26 CSM - Centre Scientifique de Monaco
27 NUI Galway - National University of Ireland [Galway]
28 OSU - Oregon State University
Corinne da Silva
Stefan Engelen
  • Function : Author
  • PersonId : 1322751
  • IdHAL : sengelen
Emmanuel Boss
  • Function : Author
  • PersonId : 1085239
Chris Bowler
Stéphanie Reynaud
  • Function : Author
  • PersonId : 1121589
Didier Zoccola
  • Function : Author
  • PersonId : 855074
Jean-Marc Aury
Patrick Wincker

Abstract

Coral reef science is a fast-growing field propelled by the need to better understand coral health and resilience to devise strategies to slow reef loss resulting from environmental stresses. Key to coral resilience are the symbiotic interactions established within a complex holobiont, i.e. the multipartite assemblages comprising the host coral organism, endosymbiotic dinoflagellates, bacteria, archaea, fungi, and viruses. Tara Pacific is an ambitious project built upon the experience of previous Tara Oceans expeditions, and leveraging state-of-the-art sequencing technologies and analyses to dissect the biodiversity and biocomplexity of the coral holobiont screened across most archipelagos spread throughout the entire Pacific Ocean. Here we detail the Tara Pacific workflow for multi-omics data generation, from sample handling to nucleotide sequence data generation and deposition. This unique multidimensional framework also includes a large amount of concomitant metadata collected side-by-side that provide new assessments of coral reef biodiversity including micro-biodiversity and shape future investigations of coral reef dynamics and their fate in the Anthropocene.
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Dates and versions

cea-03713370 , version 1 (05-07-2022)
cea-03713370 , version 2 (12-07-2022)

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Caroline Belser, Julie Poulain, Karine Labadie, Frederick Gavory, Adriana Alberti, et al.. Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition. 2022. ⟨cea-03713370v2⟩
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